change PlasMapper by cirdna EMBOSS
As commented in issue #3 (closed) , PlasMapper generates problems and can be replaced by cirdna, a program from EMBOSS.
The doc of cirdna is here.
I test it and see that commandline works fine without any prompt if I type:
cirdna -posblock Out -posticks Out -blocktype Outline -graphout png -ruler Y -infile input.txt -goutfile test
These points are promising:
- GPLv3 licence
- easy to use/implement
- easy to install (sudo apt install emboss)
- simple are therefore robust
The dev work will be to parse blast output into the appropriate text format to be passed as cirdna input.
Edited by Gael Yvert