- Jun 16, 2021
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nfontrod authored
src/figures_utils/TF_venn_of_project_with_common_origin.py: figure to create venn diagram between projects of the same origin
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nfontrod authored
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nfontrod authored
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nfontrod authored
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nfontrod authored
src/db_utils/db_creation.py: modification of create_cin_project_tf_table function to add a new column : knock_method
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- Jun 14, 2021
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nfontrod authored
src/find_interaction_cluster/clip_figures/clip_analyser.py: change in create_table to be able to select the kind offactor to analyse
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nfontrod authored
src/find_interaction_cluster/barplot_factor_n_enriched_clusters.py: Script that creates barplots figures for every splicing factor indicating how many genes are up and down regulated by every splicing factor and the number of spatial cluster enriched in those genes
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nfontrod authored
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- Jun 11, 2021
- Jun 09, 2021
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nfontrod authored
src/find_interaction_cluster/sf_and_community_recap_table.py: creates a recap table of the results produced by sf_and_other_communitities.py
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nfontrod authored
src/find_interaction_cluster/sf_and_other_communitities.py: script to check if splicing or transcription factors regulates genes/exons concentrated in communities for 7 community files
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nfontrod authored
src/find_interaction_cluster/__main__.py: launch community enrichment for genes regulated by splicing factors and transcription factors
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nfontrod authored
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nfontrod authored
src/find_interaction_cluster/sf_and_communities.py: fixes and modification to create one file for each regulation and. modification to handle transcription factors
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nfontrod authored
src/figures_utils/exons_interactions.py: modification of get_every_events_4_a_sl to recover both up and down exons
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nfontrod authored
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- Jun 08, 2021
- Jun 03, 2021
- May 12, 2021
- May 10, 2021
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nfontrod authored
src/find_interaction_cluster/graph_figures/sf_community_graph.py: graph creation displaying the community regulated by many splicing factors and how they interact between them
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nfontrod authored
src/find_interaction_cluster/graph_figures/create_community_node_graph.py: create a graph where each dot corresponds to a dot
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nfontrod authored
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nfontrod authored
src/find_interaction_cluster/sf_and_communities.py: get_sfname: dont get factors corresponding to the union of the splicing factor
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nfontrod authored
src/find_interaction_cluster/sf_and_communities.py: get_sfname: update the function to get all the splicing factor stored in the database
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- May 07, 2021
- May 04, 2021
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nfontrod authored
src/find_interaction_cluster/graph_figures/*.py: add a submodule to represent each community enriched in genes/exons regulated by a splicing factor
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nfontrod authored
src/find_interaction_cluster/clip_figures/__main__.py: changes in clip_analysis to be able to make community figure showing the precentage of gene in each community regulated by a splicing factor
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nfontrod authored
src/find_interaction_cluster/clip_figures/clip_analyser.py : changes in create_figure and in clip_folder_analysis to be able to create figures of exons regulated by a splicing factor
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- Apr 30, 2021
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nfontrod authored
src/find_interaction_cluster/community_finder.py: modification of write_cytoscape graph to produce json graph
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