src/find_interaction_cluster/community_figures/__main__.py: Add a parameter alpha

src/find_interaction_cluster/community_figures/__main__.py

@@ -55,7 +55,8 @@ def create_community_figures(table: str, feature: str, target_col: str,
                              output: str, outfile: str, test_type: str,
                              target_kind: str = "", sd_community: str = "y",
                              iteration: int = 10000,
-                             display_size: bool = False) -> None:
+                             display_size: bool = False,
+                             alpha: float = 0.05) -> None:
     """
     Create a dataframe with a control community, save it as a table and \
     as a barplot figure.
@@ -78,7 +79,11 @@ def create_community_figures(table: str, feature: str, target_col: str,
     false else.
     :param display_size: True to display the size of the community above \
     each one of them False to display nothing. (default False)
+    :param alpha: Type I error threshold
     """
+    if alpha != 0.05 and test_type != "permutation":
+        raise NotImplementedError(f"You can't change the alpha if you're "
+                                  f"not using a permutation test.")
     df = load_and_check_table(table, feature, target_col)
     if not outfile.endswith(".pdf"):
         raise FileNameError("The output figure must be in pdf format !")
@@ -86,7 +91,8 @@ def create_community_figures(table: str, feature: str, target_col: str,
     sd_community = sd_community.lower() == 'y'
     create_community_fig(df, feature, target_col, moutfile, test_type,
                          target_kind=target_kind, iteration=iteration,
-                         sd_community=sd_community, display_size=display_size)
+                         sd_community=sd_community, display_size=display_size,
+                         alpha=alpha)
 
 
 if __name__ == "__main__":