db_utils/interactions/config_interactions.py: modifications to allow to add the distance between genes or exons in pairwise interactions

db_utils/db_creation.py: modifications to add the distance information in the tables cin_gene_interaction and cin_exon_interaction

features_interactions.py: modifications to add the distance between genes or exons in pairwise interactions

src/nt_composition/make_nt_correlation.py: creation of a get_dic_co_regulated_exon, deletion of get_all_exon_interacting_with_another and get_interacting_exon and modification of create_density_table to get all co-localized exon interacting with another more efficiently

src/nt_composition/make_nt_correlation.py: modification of get_project_colocalisation function to keep or not the co-localisation comming from the same gene. And deletion of remove_exonsrc/nt_composition/make_nt_correlation.pyin_the_same_gene function

src/nt_composition/get_projects_interaction.py: add a new parameter, same_gene to choose whether or not to keep the co-localised exons within the same gene + modification of get_interaction_by_project function to use this new parameter

src/nt_composition/make_nt_correlation.py src/nt_composition/__main__.py: Creation of a new parameter same_gene allowing to remove or keep the co-localisation within the same gene

src/nt_composition/make_nt_correlation.py src/nt_composition/__main__.py: Add the parameters ft_type to chose the kind of feature to analyse

src/nt_composition/config.py : Creation of a get_feature function to recover the feature of interest

src/nt_composition/make_nt_correlation.py: add a global weight parameters to combine projects co-localisations

src/nt_composition/config.py: Creation of get_interaction_file and get_weight_folder function + modification of get_density_file and get_density_recap function

src/nt_composition/make_nt_correlation.py: takes now a weight corresponding to the number of time an interaction must be seen to be taken into account

src/nt_composition/get_projects_interaction.py: takes now a weight corresponding to the number of time an interaction must be seen to be taken into account

src/nt_composition/make_nt_correlation.py: Modification of create_all_frequency_figure to make the density figure for all chIA-PET projets

src/nt_composition/make_nt_correlation.py: creation of a script that create density figures to see if regulated exons have the same composition as their co-localized exons

src/nt_composition/get_projects_interaction.py: This script creates a figure that shows the number of co-localisation in chia-pet projects, and select some projects with different number of interaction

src/nt_composition/config.py: Creation of a config file that stores every variable used in submodule ,t_composition