src/nt_composition/config.py: Creation of a config file that stores every...

src/nt_composition/config.py: Creation of a config file that stores every variable used in submodule ,t_composition

src/nt_composition/config.py

+#!/usr/bin/env python3
+
+# -*- coding: UTF-8 -*-
+
+"""
+Description: This file contains the location of every input and result \
+file that will be produced by this module.
+"""
+
+from ..db_utils.config import Config
+
+
+def get_density_file(project: str, ft_type: str, ft: str,
+                     fig: bool = False):
+    """
+    Get the filename that will contain the density data or figure.
+
+    :param project: A project name
+    :param ft_type: A feature type
+    :param ft: A feature
+    :param fig: Say if the result file is a figure or not
+    :return: The filename that will contain the density data or figure.
+    """
+    if fig:
+        ext = "pdf"
+    else:
+        ext = "txt"
+    res_folder = ConfigNt.density_folder / project
+    res_folder.mkdir(exist_ok=True, parents=True)
+    return res_folder / f"{project}_{ft_type}_{ft}_density.{ext}"
+
+
+def get_density_recap(ft_type: str, ft: str, fig: bool = False):
+    """
+    Get the density correlation recap file.
+
+    :param ft_type:  A feature type
+    :param ft:  A feature
+    :return:
+    """
+    if fig:
+        ext = "pdf"
+    else:
+        ext = "txt"
+    ConfigNt.density_folder.mkdir(exist_ok=True, parents=True)
+    return ConfigNt.density_folder / f"{ft_type}_{ft}_density_recap.{ext}"
+
+
+class ConfigNt:
+    """
+    A class containing every parameters used in the submodule nt_composition
+    """
+    data = Config.data
+    result = Config.results
+    db_file = Config.db_file
+    output_folder = result / "nt_composition"
+    interaction = output_folder / 'interaction_number'
+    interaction_file = interaction / "interaction_number_by_project.txt"
+    density_folder = output_folder / 'density_fig'
+    get_density_recap = get_density_recap
+    selected_project = interaction / "selected_sample.txt"
+    get_density_file = get_density_file
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