From 43d320450cc70ceddc00684956b54e70b1ff1a49 Mon Sep 17 00:00:00 2001
From: Fontrodona Nicolas <nicolas.fontrodona@ens-lyon.fr>
Date: Wed, 10 Jun 2020 14:27:00 +0200
Subject: [PATCH] src/nt_composition/config.py: Creation of a config file that
stores every variable used in submodule ,t_composition
---
src/nt_composition/config.py | 62 ++++++++++++++++++++++++++++++++++++
1 file changed, 62 insertions(+)
create mode 100644 src/nt_composition/config.py
diff --git a/src/nt_composition/config.py b/src/nt_composition/config.py
new file mode 100644
index 00000000..dea52748
--- /dev/null
+++ b/src/nt_composition/config.py
@@ -0,0 +1,62 @@
+#!/usr/bin/env python3
+
+# -*- coding: UTF-8 -*-
+
+"""
+Description: This file contains the location of every input and result \
+file that will be produced by this module.
+"""
+
+from ..db_utils.config import Config
+
+
+def get_density_file(project: str, ft_type: str, ft: str,
+ fig: bool = False):
+ """
+ Get the filename that will contain the density data or figure.
+
+ :param project: A project name
+ :param ft_type: A feature type
+ :param ft: A feature
+ :param fig: Say if the result file is a figure or not
+ :return: The filename that will contain the density data or figure.
+ """
+ if fig:
+ ext = "pdf"
+ else:
+ ext = "txt"
+ res_folder = ConfigNt.density_folder / project
+ res_folder.mkdir(exist_ok=True, parents=True)
+ return res_folder / f"{project}_{ft_type}_{ft}_density.{ext}"
+
+
+def get_density_recap(ft_type: str, ft: str, fig: bool = False):
+ """
+ Get the density correlation recap file.
+
+ :param ft_type: A feature type
+ :param ft: A feature
+ :return:
+ """
+ if fig:
+ ext = "pdf"
+ else:
+ ext = "txt"
+ ConfigNt.density_folder.mkdir(exist_ok=True, parents=True)
+ return ConfigNt.density_folder / f"{ft_type}_{ft}_density_recap.{ext}"
+
+
+class ConfigNt:
+ """
+ A class containing every parameters used in the submodule nt_composition
+ """
+ data = Config.data
+ result = Config.results
+ db_file = Config.db_file
+ output_folder = result / "nt_composition"
+ interaction = output_folder / 'interaction_number'
+ interaction_file = interaction / "interaction_number_by_project.txt"
+ density_folder = output_folder / 'density_fig'
+ get_density_recap = get_density_recap
+ selected_project = interaction / "selected_sample.txt"
+ get_density_file = get_density_file
\ No newline at end of file
--
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