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LBMC
ReGArDS
ChIA-PET_network
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e473cd52e901820c352bd75e63b5111431197cc2
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chia-pet_network
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authors
fmortreu
fmortreu
hpolvech
hpolvech
Laurent Modolo
lmodolo
Matthaus Sirvent
msirvent
nfontrod
nfontrod
5 authors
Apr 23, 2021
src/hic_TAD_caller/create_TAD_HiC_files/calling_tads.py: fix test of add_cell_column function
· e473cd52
nfontrod
authored
4 years ago
e473cd52
src/find_interaction_cluster/community_calibration.py: fix create_community_size_dataframe tests
· 14c1c93e
nfontrod
authored
4 years ago
14c1c93e
src/find_interaction_cluster/clip_figures/communities_similarities.py:...
· 92f2d8c3
nfontrod
authored
4 years ago
92f2d8c3
src/find_interaction_cluster/clip_figures/clip_analyser_fake_community.py: fix...
· 3f3920fc
nfontrod
authored
4 years ago
3f3920fc
src/figures_utils/exons_interactions.py: fix test in get_info_from_database function
· 6fc14dcb
nfontrod
authored
4 years ago
6fc14dcb
src/db_utils/projects_metadata/get_fill_metadata.py: fix import
· 2b967446
nfontrod
authored
4 years ago
2b967446
requirements.txt: update
· 8deda9bf
nfontrod
authored
4 years ago
8deda9bf
Mar 23, 2021
src/find_interaction_cluster/clip_figures/clip_compo_analyser.py: modification...
· 2b6b1d58
nfontrod
authored
4 years ago
2b6b1d58
tests/files/exons.bed: header removed
· 62b9bee1
nfontrod
authored
4 years ago
62b9bee1
src/download_encode_eclip/merge_eclip.py: add a parameter level in...
· db1d1d1e
nfontrod
authored
4 years ago
db1d1d1e
src/download_encode_eclip/create_gene_bed.py: add a parameter level in...
· b5f1625c
nfontrod
authored
4 years ago
b5f1625c
src/download_encode_eclip/config.py: add variable output_exon
· a7aa08a1
nfontrod
authored
4 years ago
a7aa08a1
Mar 19, 2021
tests/files/expression.txt: add an expression test file
· 81295aaf
nfontrod
authored
4 years ago
81295aaf
src/find_interaction_cluster/clip_figures/clip_compo_launcher.py: add a parameter expression_file
· 7ae73520
nfontrod
authored
4 years ago
7ae73520
src/find_interaction_cluster/clip_figures/clip_compo_analyser.py: changes to...
· a824f6dc
nfontrod
authored
4 years ago
a824f6dc
src/find_interaction_cluster/clip_figures/clip_launcher_4_many_communities.py:...
· 893c14f8
nfontrod
authored
4 years ago
893c14f8
src/find_interaction_cluster/clip_figures/clip_analyser.py: add new functions...
· 50c513bd
nfontrod
authored
4 years ago
50c513bd
Mar 02, 2021
src/download_encode_eclip/merge_eclip.py: modification of merge_files function...
· a5c58fa2
nfontrod
authored
4 years ago
a5c58fa2
src/download_encode_eclip/config.py: add a new variable 'output_gene'
· f63dde59
nfontrod
authored
4 years ago
f63dde59
src/download_encode_eclip/create_gene_bed.py: script to create a bed file of...
· 53af41fc
nfontrod
authored
4 years ago
53af41fc
Feb 25, 2021
src/find_interaction_cluster/clip_figures/clip_compo_analyser.py: fix middle community analysis
· d0cae3c0
nfontrod
authored
4 years ago
d0cae3c0
src/find_interaction_cluster/clip_figures/clip_analyser_fake_community.py:...
· 6be00fec
nfontrod
authored
4 years ago
6be00fec
Feb 22, 2021
src/hic_TAD_caller/create_TAD_HiC_files/calling_tads.py: avoid merging adjacent TAD together
· 3848b553
nfontrod
authored
4 years ago
3848b553
src/find_interaction_cluster/clip_figures/communities_similarities.py: Create...
· c04d7383
nfontrod
authored
4 years ago
c04d7383
src/find_interaction_cluster/clip_figures/clip_compo_analyser.py: the...
· 8907d939
nfontrod
authored
4 years ago
8907d939
src/find_interaction_cluster/clip_figures/clip_analyser.py: fix bedtools intersect function
· 5f9c7b75
nfontrod
authored
4 years ago
5f9c7b75
Feb 17, 2021
src/find_interaction_cluster/clip_figures/clip_compo_analyser.py: chnages and...
· 17441b57
nfontrod
authored
4 years ago
17441b57
src/find_interaction_cluster/clip_figures/clip_compo_launcher.py: pep8 changes
· 1712468f
nfontrod
authored
4 years ago
1712468f
src/find_interaction_cluster/clip_figures/clip_launcher_4_many_communities.py:...
· b40c5634
nfontrod
authored
4 years ago
b40c5634
src/find_interaction_cluster/clip_figures/config.py: add arrowhead communities
· 807422b4
nfontrod
authored
4 years ago
807422b4
src/download_encode_eclip/merge_eclip.py: modification of merge_files function...
· 7028126e
nfontrod
authored
4 years ago
7028126e
src/hic_TAD_caller/create_TAD_HiC_files/calling_tads.py: Add a step that...
· 01dcc3c6
nfontrod
authored
4 years ago
01dcc3c6
Feb 09, 2021
src/hic_TAD_caller/create_TAD_HiC_files/calling_tads.py: change in liftover...
· d150bfc6
nfontrod
authored
4 years ago
d150bfc6
src/find_interaction_cluster/clip_figures/config.py: add communities and communities_name variable
· b8a9512f
nfontrod
authored
4 years ago
b8a9512f
src/find_interaction_cluster/clip_figures/clip_launcher_4_many_communities.py:...
· 8100dae6
nfontrod
authored
4 years ago
8100dae6
src/find_interaction_cluster/tad_to_communities/config.py: Add target_gene and target_exon values
· 7a662fe1
nfontrod
authored
4 years ago
7a662fe1
src/find_interaction_cluster/tad_to_communities/tad_to_communities.py:...
· d755fefb
nfontrod
authored
4 years ago
d755fefb
src/find_interaction_cluster/config.py: fix merge problem by re-creating...
· 569867e4
nfontrod
authored
4 years ago
569867e4
src/hic_TAD_caller/create_TAD_HiC_files/__main__.py: creation of a function...
· fd7239e6
nfontrod
authored
4 years ago
fd7239e6
src/hic_TAD_caller/create_TAD_HiC_files/calling_tads.py: add a parameter resolution
· 00fdcad8
nfontrod
authored
4 years ago
00fdcad8
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