src/find_interaction_cluster/clip_figures/clip_compo_launcher.py: add a parameter expression_file

src/find_interaction_cluster/clip_figures/clip_compo_launcher.py

@@ -19,7 +19,7 @@ import multiprocessing as mp
 def launcher(clip_result_folder: str, feature: str,
              threshold_feature: int, default_groups: int,
              cpnt_type: str, region: str = "gene",
-             ps: int = 1, display_size: bool=False,
+             ps: int = 1, display_size: bool=False, expression_file: str = "",
              logging_level: str = "DISABLE") -> None:
     """
     Create multiple composition figures from a result clip folder.
@@ -38,6 +38,9 @@ def launcher(clip_result_folder: str, feature: str,
     :param ps: The number of processes to create (default 1)
     :param display_size: True to display the size of the community. \
     False to display nothing. (default False)
+    :param expression_file: A file containing the expression values of \
+    genes (default ''). If this file is provided, then the weakly expressed \
+    genes are filtered out from the analysis.
     :param logging_level: The level of data to display (default 'DISABLE')
     """
     clip_result_folder = Path(clip_result_folder)
@@ -45,7 +48,7 @@ def launcher(clip_result_folder: str, feature: str,
         raise NotADirectoryError(f"Directory {clip_result_folder} don't exist")
     create_multiple_figures(clip_result_folder, feature, threshold_feature,
                             default_groups, cpnt_type, region, ps,
-                            display_size, logging_level)
+                            display_size, expression_file, logging_level)
 
 
 if __name__ == "__main__":