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LBMC
ReGArDS
ChIA-PET_network
Commits
2b967446
Commit
2b967446
authored
4 years ago
by
nfontrod
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src/db_utils/projects_metadata/get_fill_metadata.py: fix import
parent
8deda9bf
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src/db_utils/projects_metadata/get_fill_metadata.py
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src/db_utils/projects_metadata/get_fill_metadata.py
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src/db_utils/projects_metadata/get_fill_metadata.py
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2b967446
...
...
@@ -9,7 +9,7 @@ Then it allows to get data to fill the projects table in the ChIA-PET database.
"""
import
subprocess
from
.config_metadata
_chiapet
import
Config_metadata
as
Config
from
.config_metadata
import
Config_metadata
as
Config
import
pandas
as
pd
from
io
import
StringIO
from
..populate_database
import
populate_df
...
...
@@ -24,7 +24,7 @@ def launch_pmagicGEO_script() -> None:
that we want to study.
"""
subprocess
.
check_call
(
f
"
PmagicGEO.pl -i
{
Config
.
geo_id_file
}
"
subprocess
.
check_call
(
f
"
/media/Data/Projects/2020_03_4_PmagicGeo/pmagicgeo/
PmagicGEO.pl -i
{
Config
.
geo_id_file
}
"
f
"
-p
{
Config
.
output
}
"
f
"
-o
{
Config
.
outfile
}
"
,
shell
=
True
,
stderr
=
subprocess
.
STDOUT
)
...
...
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