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Commit 2b967446 authored by nfontrod's avatar nfontrod
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src/db_utils/projects_metadata/get_fill_metadata.py: fix import

parent 8deda9bf
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......@@ -9,7 +9,7 @@ Then it allows to get data to fill the projects table in the ChIA-PET database.
"""
import subprocess
from .config_metadata_chiapet import Config_metadata as Config
from .config_metadata import Config_metadata as Config
import pandas as pd
from io import StringIO
from ..populate_database import populate_df
......@@ -24,7 +24,7 @@ def launch_pmagicGEO_script() -> None:
that we want to study.
"""
subprocess.check_call(f"PmagicGEO.pl -i {Config.geo_id_file} "
subprocess.check_call(f"/media/Data/Projects/2020_03_4_PmagicGeo/pmagicgeo/PmagicGEO.pl -i {Config.geo_id_file} "
f"-p {Config.output} " f"-o {Config.outfile}",
shell=True, stderr=subprocess.STDOUT)
......
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