From 2b96744656fd1ec2ef329b1ff4e84aa5c01c68bb Mon Sep 17 00:00:00 2001
From: Fontrodona Nicolas <nicolas.fontrodona@ens-lyon.fr>
Date: Fri, 23 Apr 2021 16:12:13 +0200
Subject: [PATCH] src/db_utils/projects_metadata/get_fill_metadata.py: fix
import
---
src/db_utils/projects_metadata/get_fill_metadata.py | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/src/db_utils/projects_metadata/get_fill_metadata.py b/src/db_utils/projects_metadata/get_fill_metadata.py
index a63bed61..9e003e7b 100644
--- a/src/db_utils/projects_metadata/get_fill_metadata.py
+++ b/src/db_utils/projects_metadata/get_fill_metadata.py
@@ -9,7 +9,7 @@ Then it allows to get data to fill the projects table in the ChIA-PET database.
"""
import subprocess
-from .config_metadata_chiapet import Config_metadata as Config
+from .config_metadata import Config_metadata as Config
import pandas as pd
from io import StringIO
from ..populate_database import populate_df
@@ -24,7 +24,7 @@ def launch_pmagicGEO_script() -> None:
that we want to study.
"""
- subprocess.check_call(f"PmagicGEO.pl -i {Config.geo_id_file} "
+ subprocess.check_call(f"/media/Data/Projects/2020_03_4_PmagicGeo/pmagicgeo/PmagicGEO.pl -i {Config.geo_id_file} "
f"-p {Config.output} " f"-o {Config.outfile}",
shell=True, stderr=subprocess.STDOUT)
--
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