diff --git a/src/db_utils/projects_metadata/get_fill_metadata.py b/src/db_utils/projects_metadata/get_fill_metadata.py index a63bed61ff07fc291a83e8077bee88298315900c..9e003e7b71037664271bccd212a17f8633616a89 100644 --- a/src/db_utils/projects_metadata/get_fill_metadata.py +++ b/src/db_utils/projects_metadata/get_fill_metadata.py @@ -9,7 +9,7 @@ Then it allows to get data to fill the projects table in the ChIA-PET database. """ import subprocess -from .config_metadata_chiapet import Config_metadata as Config +from .config_metadata import Config_metadata as Config import pandas as pd from io import StringIO from ..populate_database import populate_df @@ -24,7 +24,7 @@ def launch_pmagicGEO_script() -> None: that we want to study. """ - subprocess.check_call(f"PmagicGEO.pl -i {Config.geo_id_file} " + subprocess.check_call(f"/media/Data/Projects/2020_03_4_PmagicGeo/pmagicgeo/PmagicGEO.pl -i {Config.geo_id_file} " f"-p {Config.output} " f"-o {Config.outfile}", shell=True, stderr=subprocess.STDOUT)