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Created with Raphaël 2.2.018Jul1313Jun830May251795229Apr282622211531Mar181542128Feb2523161514111026Jan2524212019131176Dec15Nov12985229Oct251121Sep1716131Aug1913927Jul242221191716151413129876532129Jun2216141198312May107430Apr292323Mar19225Feb22179852127Jan25222120191815131275417Dec1627Nov2625242320191716629Oct28272625Sep24177Aug415Jul1063130Jun2625231918171210910Apr9627Mar26111096543src/figures_utils/obtain_infos_launch_communities_figures.py: add lines of code to do it with complexes data: complex portal and corumMerge branch 'dev' of gitlab_lbmc:LBMC/regards/chia-pet_network into devsrc/find_interaction_cluster/ppi_scripts/config_ppi.py: delete variable bed_ensemblsrc/find_interaction_cluster/Heatmap_composition/get_signature_graph.py: update signature graphsrc/db_utils/frequency_scripts/config_freq.py: update to add diaaMerge branch 'dev' of gitbio.ens-lyon.fr:LBMC/regards/chia-pet_network into devsrc/db_utils/frequency_scripts/orf_frequency_functions.py: update to add diaasrc/db_utils/frequency_scripts/create_n_fill_exon_frequency_file.py: update to add diaaMerge branch 'dev' of https://gitbio.ens-lyon.fr/LBMC/regards/chia-pet_network into devsrc/figures_utils/parser_kegg_pathway.py: initial commit of this script that allows to obtain the genes by pathway and to produce the files to launch the src.find_interaction_cluster.community_figuressrc/figures_utils/parser_kegg_pathway.py: initial commit of this script that allows to obtain the genes by pathway and to produce the files to launch the src.find_interaction_cluster.community_figuressrc/figures_utils/obtain_infos_launch_communities_figures.py: update to modified output_folder argument to requiredsrc/figures_utils/obtain_infos_launch_communities_figures.py: update to modified data_type argument to requiredsrc/figures_utils/study_of_gene_pair_interactions.py: update to modified arguments to not requiredsrc/figures_utils/obtain_infos_launch_communities_figures.py: update to modified arguments to not requiredsearch_ppi_from_clusters : initial commitsrc/find_interaction_cluster/Heatmap_composition/get_signature_graph.py: add community node and param_community parametersrc/find_interaction_cluster/Heatmap_composition/get_signature_graph.py: fix get_node_id_by_label functionsrc/find_interaction_cluster/Heatmap_composition/get_signature_graph.py: fix the way to found ancestor node by labelsrc/find_interaction_cluster/Heatmap_composition/get_signature_graph.py: add a root levelsrc/find_interaction_cluster/Heatmap_composition/config.py: Add periodic_dic parametersrc/find_interaction_cluster/Heatmap_composition/get_signature_graph.py: add related input parametersrc/find_interaction_cluster/Heatmap_composition/get_signature_graph.py: add display parametersrc/find_interaction_cluster/Heatmap_composition/get_signature_graph.py: major change to display signature cluster by clustersrc/find_interaction_cluster/Heatmap_composition/get_signature_graph.py: change ouput graph namesrc/find_interaction_cluster/Heatmap_composition/get_signature_graph.py: script to display siganture as a graphMerge branch 'dev' of gitlab_lbmc:LBMC/regards/chia-pet_network into devsrc/find_interaction_cluster/Heatmap_composition/get_signature.py: fix get_simplified_signature_table to avoid bugs if not all nucleotides check for an enrichment were checked for periodicitysrc/figures_utils/nb_cluster_genes_st.py: minor changessrc/figures_utils/nb_cluster_genes_st.py: minor correctionssrc/figures_utils/stat_impact_factors_on_communities.py: update of this script to launch it on several filessrc/figures_utils/stat_impact_factors_on_communities.py: update of this script to launch it on several filessrc/figures_utils/nb_cluster_genes_st.py: update of this script to laucn it on MF, C, CC, ...src/figures_utils/config_figures.py: update to launch the stat_impact_factors_on_communities.py scriptMerge branch 'dev' of gitlab_lbmc:LBMC/regards/chia-pet_network into devsrc/figures_utils/stat_impact_factors_on_communities.py: initial commit of this script to study if communities are often regulated by factorssrc/figures_utils/obtain_data_factors.py: update to remove the final error with go term analysissrc/figures_utils/nb_cluster_genes_st_lineplot.py: update to add the number of genes by communitysrc/find_interaction_cluster/Heatmap_composition/create_signature.py: fix script to be able to launch the creation of signature filesrc/find_interaction_cluster/Heatmap_composition/create_signature.py: create the spatial clusters signature