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LBMC
ReGArDS
ChIA-PET_network
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2b96744656fd1ec2ef329b1ff4e84aa5c01c68bb
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src/figures_utils/obtain_infos_launch_communities_figures.py: add lines of code to do it with complexes data: complex portal and corum
Merge branch 'dev' of gitlab_lbmc:LBMC/regards/chia-pet_network into dev
src/find_interaction_cluster/ppi_scripts/config_ppi.py: delete variable bed_ensembl
src/find_interaction_cluster/Heatmap_composition/get_signature_graph.py: update signature graph
src/db_utils/frequency_scripts/config_freq.py: update to add diaa
Merge branch 'dev' of gitbio.ens-lyon.fr:LBMC/regards/chia-pet_network into dev
src/db_utils/frequency_scripts/orf_frequency_functions.py: update to add diaa
src/db_utils/frequency_scripts/create_n_fill_exon_frequency_file.py: update to add diaa
Merge branch 'dev' of https://gitbio.ens-lyon.fr/LBMC/regards/chia-pet_network into dev
src/figures_utils/parser_kegg_pathway.py: initial commit of this script that allows to obtain the genes by pathway and to produce the files to launch the src.find_interaction_cluster.community_figures
src/figures_utils/parser_kegg_pathway.py: initial commit of this script that allows to obtain the genes by pathway and to produce the files to launch the src.find_interaction_cluster.community_figures
src/figures_utils/obtain_infos_launch_communities_figures.py: update to modified output_folder argument to required
src/figures_utils/obtain_infos_launch_communities_figures.py: update to modified data_type argument to required
src/figures_utils/study_of_gene_pair_interactions.py: update to modified arguments to not required
src/figures_utils/obtain_infos_launch_communities_figures.py: update to modified arguments to not required
search_ppi_from_clusters : initial commit
src/find_interaction_cluster/Heatmap_composition/get_signature_graph.py: add community node and param_community parameter
src/find_interaction_cluster/Heatmap_composition/get_signature_graph.py: fix get_node_id_by_label function
src/find_interaction_cluster/Heatmap_composition/get_signature_graph.py: fix the way to found ancestor node by label
src/find_interaction_cluster/Heatmap_composition/get_signature_graph.py: add a root level
src/find_interaction_cluster/Heatmap_composition/config.py: Add periodic_dic parameter
src/find_interaction_cluster/Heatmap_composition/get_signature_graph.py: add related input parameter
src/find_interaction_cluster/Heatmap_composition/get_signature_graph.py: add display parameter
src/find_interaction_cluster/Heatmap_composition/get_signature_graph.py: major change to display signature cluster by cluster
src/find_interaction_cluster/Heatmap_composition/get_signature_graph.py: change ouput graph name
src/find_interaction_cluster/Heatmap_composition/get_signature_graph.py: script to display siganture as a graph
Merge branch 'dev' of gitlab_lbmc:LBMC/regards/chia-pet_network into dev
src/find_interaction_cluster/Heatmap_composition/get_signature.py: fix get_simplified_signature_table to avoid bugs if not all nucleotides check for an enrichment were checked for periodicity
src/figures_utils/nb_cluster_genes_st.py: minor changes
src/figures_utils/nb_cluster_genes_st.py: minor corrections
src/figures_utils/stat_impact_factors_on_communities.py: update of this script to launch it on several files
src/figures_utils/stat_impact_factors_on_communities.py: update of this script to launch it on several files
src/figures_utils/nb_cluster_genes_st.py: update of this script to laucn it on MF, C, CC, ...
src/figures_utils/config_figures.py: update to launch the stat_impact_factors_on_communities.py script
Merge branch 'dev' of gitlab_lbmc:LBMC/regards/chia-pet_network into dev
src/figures_utils/stat_impact_factors_on_communities.py: initial commit of this script to study if communities are often regulated by factors
src/figures_utils/obtain_data_factors.py: update to remove the final error with go term analysis
src/figures_utils/nb_cluster_genes_st_lineplot.py: update to add the number of genes by community
src/find_interaction_cluster/Heatmap_composition/create_signature.py: fix script to be able to launch the creation of signature file
src/find_interaction_cluster/Heatmap_composition/create_signature.py: create the spatial clusters signature
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