- Jul 10, 2020
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nfontrod authored
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nfontrod authored
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nfontrod authored
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nfontrod authored
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nfontrod authored
src/find_interaction_cluster/community_finder.py: add multiple_stat_launcher function that is written in sf_and_communities.py file
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nfontrod authored
src/find_interaction_cluster/community_finder.py: fix get_communities function and add some loggin ddebug display in community_finder
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nfontrod authored
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nfontrod authored
src/find_interaction_cluster/sf_and_communities.py: script allowing to check if exons regulated by the sample splicing factor are co-localized
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alapendr authored
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- Jul 06, 2020
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nfontrod authored
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nfontrod authored
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nfontrod authored
src/find_interaction_cluster/install_hipMCL.py: display logging message when tring to download and install hipmcl
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nfontrod authored
src/find_interaction_cluster/__main__.py: launch installation of hipMCL before searching for communities
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nfontrod authored
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nfontrod authored
src/find_interaction_cluster/config.py: creation of three new variables get_hip_folder, get_hipmcl_prog and hip_zip
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nfontrod authored
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- Jul 03, 2020
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nfontrod authored
src/nt_composition/__main__.py: modification of launcher function to either launch create_all_frequency_figures or create_all_distance_figures based on input parameters
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nfontrod authored
src/nt_composition/config.py: modification of get_density_file by adding a new parameter king to distinguish between density and distance figure
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nfontrod authored
src/nt_composition/distance.py: script to check whether the co-localised exons have a nucleotide distance lower than randomly expected
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nfontrod authored
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alapendr authored
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alapendr authored
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alapendr authored
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alapendr authored
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alapendr authored
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- Jul 01, 2020
- Jun 30, 2020
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nfontrod authored
src/find_interaction_cluster/__main__.py: modification of main_function by adding the new parameter html_fig
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nfontrod authored
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nfontrod authored
src/find_interaction_cluster/community_finder.py: creation of write_cytoscape_graph to create a cytoscape network + modification of find_communities to use this previous function. Modification of create_figure to use a new layout for a better display. Add parameter html_fig for community_finder and multiple_community_launcher functions
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- Jun 26, 2020
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nfontrod authored
src/find_interaction_cluster/__main__.py: modification of main function to use multiple_community_launcher
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nfontrod authored
src/find_interaction_cluster/config.py: add new variables community_folder and cpu + modification of get_community_file for it to use community_folder variable
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nfontrod authored
src/find_interaction_cluster/community_finder.py: creation of lighten_color and modification of find_communities to add some data to the communities find and to change the color of the communities in function of those data + creation of multiple_community_launcher to find communities for many projects or wieghts
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nfontrod authored
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- Jun 25, 2020
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nfontrod authored
src/find_interaction_cluster/community_finder.py: Script that seach communities whithin co-localisation network
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nfontrod authored
src/find_interaction_cluster/__main__.py: launcher to execute the scripts in the submodule src/find_interaction_cluster
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nfontrod authored
src/find_interaction_cluster/config.py: creation of a config file that store every variable used in the submodule src/find_interaction_cluster
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nfontrod authored
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nfontrod authored
src/nt_composition/make_nt_correlation.py: creation of get_select_addition and modification of get_project_colocalisation to get the weight of the edges in the network if needed
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- Jun 23, 2020
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nfontrod authored
src/nt_composition/make_nt_correlation.py: add the parameter ft_type when get_density_recap is called in create_all_frequency_figures
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