Commits · b2bc05e3c71cad807db5048234079546820db440 · LBMC / ReGArDS / Projects_Analyzes / bigWig_visu · GitLab

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Feb 21, 2022
- src/bed_handler/filter_bed.py: change in filter_bed types · b2bc05e3
  nfontrod authored 3 years ago
  
  b2bc05e3
- src/bed_handler/config.py: Add expressed_genes variable · 583ad69e
  nfontrod authored 3 years ago
  
  583ad69e
- src/visu/__main__.py: add a stat parameter · 624eebb0
  nfontrod authored 3 years ago
  
  624eebb0
- src/visu/figure_maker.py: Add a stat parameter to perform statistical analysis... · 7abb300e
  nfontrod authored 3 years ago
  7abb300e
- src/commands.sh: update Figures 1C, figures 5C and 5B to use the new bigwig files · 75a415a8
  nfontrod authored 3 years ago
  
  75a415a8
Oct 15, 2021
- src/commands.sh: update · c3620eaa
  nfontrod authored 3 years ago
  
  c3620eaa
- src/visu/figure_maker.py: remove sd display · 4f3d0e33
  nfontrod authored 3 years ago
  
  4f3d0e33
- src/visu/__main__.py: small simplication · 208fd972
  nfontrod authored 3 years ago
  
  208fd972
Aug 12, 2021
- src/gc_content/gc_content.py: removal of the palette color · 4be65dfa
  nfontrod authored 3 years ago
  
  4be65dfa
Apr 28, 2021
- src/__init__.py: add init file · 2fecd505
  nfontrod authored 4 years ago
  
  2fecd505
Apr 16, 2021
- src/visu/__main__.py: modification in launcher docstring · 0cb66241
  nfontrod authored 4 years ago
  
  0cb66241
- src/visu/figure_maker.py: small change in load_bed · debea658
  nfontrod authored 4 years ago
  
  debea658
- src/gc_content/gc_content.py: add an id column in the table returned by... · 56acd6e8
  nfontrod authored 4 years ago
  56acd6e8
Mar 15, 2021
- src/commands.sh: add creation of meatagene and gc content figure for... · f9586e0f
  nfontrod authored 4 years ago
  f9586e0f
- src/gc_content/gc_content.py: modfication of add_stat_annotation calls in make_gc_barplot · 397729a7
  nfontrod authored 4 years ago
  
  397729a7
- src/gc_content/gc_stats.py: fix mann_whitney and make_stat function used when... · 49c0594a
  nfontrod authored 4 years ago
  49c0594a
- src/gc_content/stat_annot.py: major pep8 modifications · 6fd5c886
  nfontrod authored 4 years ago
  
  6fd5c886
- src/bed_handler/select_regulated_near_ctcf_exons.py: new function... · 0117f4ca
  nfontrod authored 4 years ago
  0117f4ca
- src/bed_handler/get_last_exons.py: script to get the last exons of each gene... · 80868e56
  nfontrod authored 4 years ago
  80868e56
- src/bed_handler/config.py: add a new variable all_vs_ctcf · ddda12b1
  nfontrod authored 4 years ago
  
  ddda12b1
- src/commands.sh: modification of metaexon file of exons regulated or in a gene... · dae2c35f
  nfontrod authored 4 years ago
  dae2c35f
Jan 27, 2021
- src/visu/figure_maker.py: change style of the figure + add parameter ylim · ccd2678b
  nfontrod authored 4 years ago
  
  ccd2678b
- src/visu/__main__.py: add parameter ylim · 7f77571e
  nfontrod authored 4 years ago
  
  7f77571e
- src/gc_content/gc_content.py: change graphic style of the figure · 0458f11d
  nfontrod authored 4 years ago
  
  0458f11d
- src/commands.sh: change gc content figure -e parameter to 2000 + coverage... · ee75d560
  nfontrod authored 4 years ago
  ee75d560
Jan 15, 2021
- src/commands.sh: removing genes with readthrough/no readthrough with a basemean <= 5 · 82ef03da
  nfontrod authored 4 years ago
  
  82ef03da
Jan 12, 2021
- src/commands.sh: executed commands · c991d467
  nfontrod authored 4 years ago
  
  c991d467
Jan 11, 2021
- src/bed_handler/filter_bed.py: add an option keep to recover every other genes... · 2a094c95
  nfontrod authored 4 years ago
  2a094c95
- src/visu/figure_maker.py: add a warning message if some bed feature cannot be reported · c22ad3fd
  nfontrod authored 4 years ago
  
  c22ad3fd
Jan 08, 2021
- src/visu/figure_maker.py: fix inspect_bigwig_regions to make it work with no environment · 337afeeb
  nfontrod authored 4 years ago
  
  337afeeb
Jan 07, 2021
- src/bed_handler/bed_resize.py: add a parameter type · bb8ce1ba
  nfontrod authored 4 years ago
  
  bb8ce1ba
Dec 18, 2020
- src/bed_handler/bed_resize.py: allow to resize the bed file · 1144c187
  nfontrod authored 4 years ago
  
  1144c187
Dec 03, 2020
- src/bed_handler/get_other_exon_in_same_gene.py: modication of outpout file... · a5e8bfbb
  nfontrod authored 4 years ago
  a5e8bfbb
- src/bed_handler/select_regulated_near_ctcf_exons.py: creation of bed file with... · e40ca2ed
  nfontrod authored 4 years ago
  e40ca2ed
- figure_maker.py: fix create_df_summary for barplot · 53d79600
  nfontrod authored 4 years ago
  
  53d79600
Dec 01, 2020
- src/bed_handler/config.py: add exons_vs_ctcf in BedConfig · 3510e8c8
  nfontrod authored 4 years ago
  
  3510e8c8
- src/bed_handler/get_other_exon_in_same_gene.py: From a list of exons get the... · 52d4c43f
  nfontrod authored 4 years ago
  52d4c43f
Nov 16, 2020
- src/gc_content/gc_content.py: fix error to tests · 60e5156d
  nfontrod authored 4 years ago
  
  60e5156d
- src/gc_content/gc_content.py: add error to tests · 7765e0d7
  nfontrod authored 4 years ago
  
  7765e0d7
Nov 06, 2020
- src/gc_content/gc_content.py: fix tests · 70c8c0f8
  nfontrod authored 4 years ago
  
  70c8c0f8