src/commands.sh: modification of metaexon file of exons regulated or in a gene...

src/commands.sh: modification of metaexon file of exons regulated or in a gene containing exons regulated by DDX5/17 near or Far from CTCF

src/commands.sh

@@ -475,15 +475,15 @@ for i in ${!list_names[*]}; do
       --region_bed results/bed_file/${bed} \
       --region_name ${cname} \
       --output results/figures/  \
-      --border_name exon_start exon_stop \
+      --border_name " " " " \
       --environment 10000 25 \
       --show_replicate n \
       --figure_type metagene \
-      --nb_bin 100 \
+      --nb_bin 30 \
       -y 0.15 0.4 \
       --norm "results/figures/coef_table/tmp_cov_table_design_exp_all_replicates_${nbed}_100bin_10000_nt-around-25-bin_bin0_norm.txt"
 
-  mv results/figures/metagene_${cname}_100bin_10000_nt-around-25-bin_file_norm.pdf results/figures/all_replicates_metagene_${cname}_100bin_10000_nt-around-25-bin_file_norm.pdf
+  mv results/figures/metagene_${cname}_30bin_10000_nt-around-25-bin_file_norm.pdf results/figures/all_replicates_metagene_${cname}_100bin_10000_nt-around-25-bin_file_norm.pdf
 done
 
 ## Recap