From dae2c35f883f8a0660d3a60234596af210cf4e7f Mon Sep 17 00:00:00 2001
From: Fontrodona Nicolas <nicolas.fontrodona@ens-lyon.fr>
Date: Mon, 15 Mar 2021 11:44:00 +0100
Subject: [PATCH] src/commands.sh: modification of metaexon file of exons
regulated or in a gene containing exons regulated by DDX5/17 near or Far from
CTCF
---
src/commands.sh | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/src/commands.sh b/src/commands.sh
index b01d5ac..07fdcb8 100644
--- a/src/commands.sh
+++ b/src/commands.sh
@@ -475,15 +475,15 @@ for i in ${!list_names[*]}; do
--region_bed results/bed_file/${bed} \
--region_name ${cname} \
--output results/figures/ \
- --border_name exon_start exon_stop \
+ --border_name " " " " \
--environment 10000 25 \
--show_replicate n \
--figure_type metagene \
- --nb_bin 100 \
+ --nb_bin 30 \
-y 0.15 0.4 \
--norm "results/figures/coef_table/tmp_cov_table_design_exp_all_replicates_${nbed}_100bin_10000_nt-around-25-bin_bin0_norm.txt"
- mv results/figures/metagene_${cname}_100bin_10000_nt-around-25-bin_file_norm.pdf results/figures/all_replicates_metagene_${cname}_100bin_10000_nt-around-25-bin_file_norm.pdf
+ mv results/figures/metagene_${cname}_30bin_10000_nt-around-25-bin_file_norm.pdf results/figures/all_replicates_metagene_${cname}_100bin_10000_nt-around-25-bin_file_norm.pdf
done
## Recap
--
GitLab