diff --git a/src/commands.sh b/src/commands.sh index b01d5acbd04103d3c24bf681680705e4197fcc39..07fdcb8bd613ae68b4ea3ca01b014b60b2615233 100644 --- a/src/commands.sh +++ b/src/commands.sh @@ -475,15 +475,15 @@ for i in ${!list_names[*]}; do --region_bed results/bed_file/${bed} \ --region_name ${cname} \ --output results/figures/ \ - --border_name exon_start exon_stop \ + --border_name " " " " \ --environment 10000 25 \ --show_replicate n \ --figure_type metagene \ - --nb_bin 100 \ + --nb_bin 30 \ -y 0.15 0.4 \ --norm "results/figures/coef_table/tmp_cov_table_design_exp_all_replicates_${nbed}_100bin_10000_nt-around-25-bin_bin0_norm.txt" - mv results/figures/metagene_${cname}_100bin_10000_nt-around-25-bin_file_norm.pdf results/figures/all_replicates_metagene_${cname}_100bin_10000_nt-around-25-bin_file_norm.pdf + mv results/figures/metagene_${cname}_30bin_10000_nt-around-25-bin_file_norm.pdf results/figures/all_replicates_metagene_${cname}_100bin_10000_nt-around-25-bin_file_norm.pdf done ## Recap