Commits · fea9a9ee89ae5d268a3daca524b4e5eb41cf4f02 · LBMC / nextflow

Apr 12, 2019
- umi_tools: add docker files · fea9a9ee
  Laurent Modolo authored 5 years ago
  
  fea9a9ee
Apr 09, 2019
- cutadapt: add v2.1 · d280e93a
  Laurent Modolo authored 5 years ago
  
  d280e93a
Mar 29, 2019
- update psmn modules · 1f8de176
  Laurent Modolo authored 6 years ago
  
  1f8de176
- hisat2: add v2.1.0 · b150232b
  Laurent Modolo authored 6 years ago
  
  b150232b
- update psmn module and hisat2 config · d51c969a
  Laurent Modolo authored 6 years ago
  
  d51c969a
- hisat2: add samtools to singularity modules · e5bd9289
  Laurent Modolo authored 6 years ago
  
  e5bd9289
- hisat2: add samtools to docker · 1079c069
  Laurent Modolo authored 6 years ago
  
  1079c069
- hisat2: merge samtools and hisat2 in the process · 59b0f72d
  Laurent Modolo authored 6 years ago
  
  59b0f72d
- hisat2: update process and config to match new format · 58d2e60a
  Laurent Modolo authored 6 years ago
  
  58d2e60a
Mar 28, 2019
- htseq: add v0.11.2 · ad48514d
  Laurent Modolo authored 6 years ago
  
  ad48514d
- update psmn_modules · c46ea8a1
  Laurent Modolo authored 6 years ago
  
  c46ea8a1
Mar 27, 2019
- src/nf_modules/Hisat2/ -> src/nf_modules/hisat2/ · 215c8f71
  nfontrod authored 6 years ago
  
  215c8f71
Mar 26, 2019
- multiqc: add v1.7 · 420b7b9e
  Laurent Modolo authored 6 years ago
  
  420b7b9e
- fastp: add nf modules files · 0d0e5587
  Laurent Modolo authored 6 years ago
  
  0d0e5587
Mar 25, 2019
- update psmn modules · 3ba7b4a1
  Laurent Modolo authored 6 years ago
  
  3ba7b4a1
- fastp: add singularity and docker files · c0582237
  Laurent Modolo authored 6 years ago
  
  c0582237
- fix subread path ion build.sh · b7ff7a02
  Laurent Modolo authored 6 years ago
  
  b7ff7a02
- fix subread version in path · 558d45ee
  Laurent Modolo authored 6 years ago
  
  558d45ee
- subread: add singularity and docker files · cbf75eb1
  Laurent Modolo authored 6 years ago
  
  cbf75eb1
- update psmn modules · 0016d12b
  Laurent Modolo authored 6 years ago
  
  0016d12b
Mar 22, 2019
- update psmn modules · 42a6ea9c
  Laurent Modolo authored 6 years ago
  
  42a6ea9c
- umitools: add docker and singularity files · edfb1092
  Laurent Modolo authored 6 years ago
  
  edfb1092
- umitools: add docker files · 66fddcca
  Laurent Modolo authored 6 years ago
  
  66fddcca
- psmn: remove mail report from config files · 016b5b22
  Laurent Modolo authored 6 years ago
  
  016b5b22
Mar 21, 2019
- update psmn modules · 7a82274f
  Laurent Modolo authored 6 years ago
  
  7a82274f
- add tests for macs2 · 5d14ce0b
  Laurent Modolo authored 6 years ago
  
  5d14ce0b
Mar 20, 2019
- macs2: add nf module file · 72ffaf95
  Laurent Modolo authored 6 years ago
  
  72ffaf95
- macs2: fix version number in singularity build · 6213625d
  Laurent Modolo authored 6 years ago
  
  6213625d
- update psmn modules · af822187
  Laurent Modolo authored 6 years ago
  
  af822187
- fix training_dataset pipeline · 7fa6b2d4
  Laurent Modolo authored 6 years ago
  
  7fa6b2d4
- cleanup · 466efb3e
  Laurent Modolo authored 6 years ago
  
  466efb3e
- script to help docker to singularity conversion · 71977cb5
  Laurent Modolo authored 6 years ago
  
  71977cb5
- add singularity files for macs2 · bd597312
  Laurent Modolo authored 6 years ago
  
  bd597312
- add singularity and docker files for macs2 · 16b188fc
  Laurent Modolo authored 6 years ago
  
  16b188fc
Mar 13, 2019
- samblaster: fix test.sh · 666c81d1
  Laurent Modolo authored 6 years ago
  
  666c81d1
Mar 07, 2019
- music: fix containers and tests · cc9f3d11
  Laurent Modolo authored 6 years ago
  
  cc9f3d11
- rsem: fix tests · 099b8b5e
  Laurent Modolo authored 6 years ago
  
  099b8b5e
Mar 06, 2019
- music: fix tests · 7b7eab24
  Laurent Modolo authored 6 years ago
  
  7b7eab24
- music: fix dockerfile · 169283c6
  Laurent Modolo authored 6 years ago
  
  169283c6
- update psmn_modules · 760da7c8
  Laurent Modolo authored 6 years ago
  
  760da7c8