Commits · f27bf1489ab141ecff93b2df667a351686c8dbcc · LBMC / nextflow

Apr 28, 2022
- Merge crey02/nextflow-add_htseq to close #29 · f27bf148
  Laurent Modolo authored 2 years ago
  
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  f27bf148
Feb 28, 2022
- src/nf_modules/hisat2/main.nf · d5cf091f
  Laurent Modolo authored 3 years ago
  
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Feb 24, 2022
- docker: sanity fix typo · a4e87410
  Laurent Modolo authored 3 years ago
  
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- Close merge request #27 · e2454d73
  Laurent Modolo authored 3 years ago
  
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  e2454d73
Jan 06, 2022
- Docker: add histat2 2.2.1 · 1011a2a3
  Laurent Modolo authored 3 years ago
  
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  1011a2a3
- Docker: add samtools 1.14 · 5090e8a5
  Laurent Modolo authored 3 years ago
  
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Nov 02, 2021
- mutliqc: Dockerfile switch from debian to python img · 6a448ad6
  Laurent Modolo authored 3 years ago
  
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- multiqc: update 1.9 -> 1.11 · bc023a73
  Laurent Modolo authored 3 years ago
  
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Oct 19, 2021
- ucsc: add bedgraph_to_wig.pl to Docker · 7a350349
  Laurent Modolo authored 3 years ago
  
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Oct 12, 2021
- docker: add crossbuild for every tools · b25300b2
  Laurent Modolo authored 3 years ago
  
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Oct 11, 2021
- docker: add crossbuild for every tools · c7d32aaa
  Laurent Modolo authored 3 years ago
  
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- docker: add crossbuild for every tools · c3fac15d
  Laurent Modolo authored 3 years ago
  
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- docker: rasusa add cross building for arm · 149987de
  Laurent Modolo authored 3 years ago
  
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Oct 08, 2021
- docker: add agat 0.8.0 · b00d2558
  Laurent Modolo authored 3 years ago
  
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- Docker: ucsc add gff to bed script · e1117c52
  Laurent Modolo authored 3 years ago
  
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- ucsc: add bedgraph_to_wig.pl script · f5ded041
  Laurent Modolo authored 3 years ago
  
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- bioconvert: add working version 0.4.0 · ed749710
  Laurent Modolo authored 3 years ago
  
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Oct 07, 2021
- docker: bioconvert switch to conda install · f512f1e5
  Laurent Modolo authored 3 years ago
  
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- Docker: add bioconvert · 0385d505
  Laurent Modolo authored 3 years ago
  
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Sep 29, 2021
- Docker: add rasusa img compatible with nf · 90eaa269
  Laurent Modolo authored 3 years ago
  
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Sep 24, 2021
- Docker emase: add ps · bbcd680f
  Laurent Modolo authored 3 years ago
  
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Sep 23, 2021
- emase: working Dockerfile for emase to install it from conda · aaa243c8
  Laurent Modolo authored 3 years ago
  
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Sep 21, 2021
- danpos3: add non working Dockerfile · bde11db3
  Laurent Modolo authored 3 years ago
  
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- emase: update Dockerfile but still not working · 0df86371
  Laurent Modolo authored 3 years ago
  
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Jul 22, 2021
- kb: t2g tools work and gz and plain file · 7a115a1a
  Laurent Modolo authored 3 years ago
  
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Jul 21, 2021
- kb: create a correction step for the t2g.txt messed with by kb · 5dc7c7f8
  Laurent Modolo authored 3 years ago
  
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Jul 15, 2021
- kb: remove gffutils buggy dependency for t2g.txt construction · 57bdbc31
  Laurent Modolo authored 3 years ago
  
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Jul 13, 2021
- kb: go back to working 0.26.0 version · a9f4a856
  Laurent Modolo authored 3 years ago
  
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- kb: add libcurl to dockerfile · b300770d
  Laurent Modolo authored 3 years ago
  
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Jul 09, 2021
- kb: update to 0.26.3 · f7a50522
  Laurent Modolo authored 3 years ago
  
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- t2g.py: fool proof output format · 14de29a9
  Laurent Modolo authored 3 years ago
  
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Jul 08, 2021
- bedtools: add v2.30.0 · fda70fd4
  Laurent Modolo authored 3 years ago
  
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Jul 07, 2021
- kb: enable infer tr and gn in t2g.py · f7dad66d
  Laurent Modolo authored 3 years ago
  
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Jul 05, 2021
- t2g.py: fix indentation · 3a878b65
  Laurent Modolo authored 3 years ago
  
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Jun 24, 2021
- docker: add htseq 0.13.5 · ed5b2f47
  Laurent Modolo authored 3 years ago
  
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Jun 09, 2021
- deeptools: fix docker file for 3.5.1 · 8d92ac19
  Laurent Modolo authored 3 years ago
  
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Jun 04, 2021
- deeptools: add libcurl3 dependency · 414cc8b9
  Laurent Modolo authored 3 years ago
  
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Jun 02, 2021
- Docker: add emase 0.10.16 · 6614fc01
  Laurent Modolo authored 3 years ago
  
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May 20, 2021
- gffread: add version 0.12.2 · 9eb61947
  Laurent Modolo authored 3 years ago
  
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May 18, 2021
- kb: change t2g.py to use classical transcript and gene gtf format · bd5b4ace
  Laurent Modolo authored 3 years ago
  
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  bd5b4ace