Skip to content
GitLab
Explore
Sign in
Primary navigation
Search or go to…
Project
nextflow
Manage
Activity
Members
Labels
Plan
Issues
Issue boards
Milestones
Wiki
Code
Merge requests
Repository
Branches
Commits
Tags
Repository graph
Compare revisions
Snippets
Build
Pipelines
Jobs
Pipeline schedules
Artifacts
Deploy
Releases
Model registry
Operate
Environments
Monitor
Incidents
Analyze
Value stream analytics
Contributor analytics
CI/CD analytics
Repository analytics
Model experiments
Help
Help
Support
GitLab documentation
Compare GitLab plans
Community forum
Contribute to GitLab
Provide feedback
Keyboard shortcuts
?
Snippets
Groups
Projects
Show more breadcrumbs
LBMC
nextflow
Commits
bde11db3
Verified
Commit
bde11db3
authored
3 years ago
by
Laurent Modolo
Browse files
Options
Downloads
Patches
Plain Diff
danpos3: add non working Dockerfile
parent
0df86371
No related branches found
Branches containing commit
No related tags found
No related merge requests found
Changes
2
Hide whitespace changes
Inline
Side-by-side
Showing
2 changed files
src/.docker_modules/danpos3/2f7f223/Dockerfile
+19
-0
19 additions, 0 deletions
src/.docker_modules/danpos3/2f7f223/Dockerfile
src/.docker_modules/danpos3/2f7f223/docker_init.sh
+4
-0
4 additions, 0 deletions
src/.docker_modules/danpos3/2f7f223/docker_init.sh
with
23 additions
and
0 deletions
src/.docker_modules/danpos3/2f7f223/Dockerfile
0 → 100644
+
19
−
0
View file @
bde11db3
FROM
ubuntu:20.04
ENV
DANPOS_VERSION="2f7f223"
ENV
TZ=Europe/Paris
RUN
ln
-snf
/usr/share/zoneinfo/
$TZ
/etc/localtime
&&
echo
$TZ
>
/etc/timezone
\
&&
apt update
-qq
\
&&
apt
install
--no-install-recommends
software-properties-common
-y
dirmngr git python
\
&&
wget
-qO-
https://cloud.r-project.org/bin/linux/ubuntu/marutter_pubkey.asc |
tee
-a
/etc/apt/trusted.gpg.d/cran_ubuntu_key.asc
\
&&
add-apt-repository
"deb https://cloud.r-project.org/bin/linux/ubuntu
$(
lsb_release
-cs
)
-cran40/"
RUN
apt-get update
\
&&
apt-get
install
-y
r-base
=
4.0.1 samtools
\
&&
git clone https://github.com/sklasfeld/DANPOS3.git
\
&&
cd
DANPOS3
\
&&
git checkout
$DANPOS_VERSION
\
&&
pip
install
-r
requirements.txt
\
&&
chmod
+x DANPOS3/
*
.py
ENV
PATH="/DANPOS3:${PATH}"
CMD
[ "bash" ]
This diff is collapsed.
Click to expand it.
src/.docker_modules/danpos3/2f7f223/docker_init.sh
0 → 100755
+
4
−
0
View file @
bde11db3
#!/bin/sh
docker pull lbmc/danpos3:2f7f223
docker build src/.docker_modules/danpos3/2f7f223
-t
'lbmc/danpos3:2f7f223'
docker push lbmc/danpos3:2f7f223
This diff is collapsed.
Click to expand it.
Preview
0%
Loading
Try again
or
attach a new file
.
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Save comment
Cancel
Please
register
or
sign in
to comment