From bde11db324d09056c239c5d65b3d2d4c57953f8b Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Tue, 21 Sep 2021 14:20:44 +0200
Subject: [PATCH] danpos3: add non working Dockerfile
---
.../danpos3/2f7f223/Dockerfile | 19 +++++++++++++++++++
.../danpos3/2f7f223/docker_init.sh | 4 ++++
2 files changed, 23 insertions(+)
create mode 100644 src/.docker_modules/danpos3/2f7f223/Dockerfile
create mode 100755 src/.docker_modules/danpos3/2f7f223/docker_init.sh
diff --git a/src/.docker_modules/danpos3/2f7f223/Dockerfile b/src/.docker_modules/danpos3/2f7f223/Dockerfile
new file mode 100644
index 00000000..f9b4f633
--- /dev/null
+++ b/src/.docker_modules/danpos3/2f7f223/Dockerfile
@@ -0,0 +1,19 @@
+FROM ubuntu:20.04
+
+ENV DANPOS_VERSION="2f7f223"
+ENV TZ=Europe/Paris
+RUN ln -snf /usr/share/zoneinfo/$TZ /etc/localtime && echo $TZ > /etc/timezone \
+&& apt update -qq \
+&& apt install --no-install-recommends software-properties-common -y dirmngr git python \
+&& wget -qO- https://cloud.r-project.org/bin/linux/ubuntu/marutter_pubkey.asc | tee -a /etc/apt/trusted.gpg.d/cran_ubuntu_key.asc \
+&& add-apt-repository "deb https://cloud.r-project.org/bin/linux/ubuntu $(lsb_release -cs)-cran40/"
+RUN apt-get update \
+&& apt-get install -y r-base=4.0.1 samtools \
+&& git clone https://github.com/sklasfeld/DANPOS3.git \
+&& cd DANPOS3 \
+&& git checkout $DANPOS_VERSION \
+&& pip install -r requirements.txt \
+&& chmod +x DANPOS3/*.py
+
+ENV PATH="/DANPOS3:${PATH}"
+CMD [ "bash" ]
diff --git a/src/.docker_modules/danpos3/2f7f223/docker_init.sh b/src/.docker_modules/danpos3/2f7f223/docker_init.sh
new file mode 100755
index 00000000..7d82f740
--- /dev/null
+++ b/src/.docker_modules/danpos3/2f7f223/docker_init.sh
@@ -0,0 +1,4 @@
+#!/bin/sh
+docker pull lbmc/danpos3:2f7f223
+docker build src/.docker_modules/danpos3/2f7f223 -t 'lbmc/danpos3:2f7f223'
+docker push lbmc/danpos3:2f7f223
--
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