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LBMC
nextflow
Commits
f512f1e5
Verified
Commit
f512f1e5
authored
3 years ago
by
Laurent Modolo
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docker: bioconvert switch to conda install
parent
c2f594c0
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src/.docker_modules/bioconvert/0.4.3/Dockerfile
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src/.docker_modules/bioconvert/0.4.3/Dockerfile
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src/.docker_modules/bioconvert/0.4.3/Dockerfile
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4
View file @
f512f1e5
FROM
python:3.9-slim
FROM
conda/miniconda3
MAINTAINER
Laurent Modolo
ENV
BIOCONVERT_VERSION="0.4.3"
RUN
conda init
\
&&
conda config
--add
channels r
\
&&
conda config
--add
channels defaults
\
&&
conda config
--add
channels conda-forge
\
&&
conda config
--add
channels bioconda
\
&&
conda create
-y
-n
bioconvert
SHELL
["conda", "run", "-n", "bioconvert", "/bin/bash", "-c"]
RUN
conda
install
bioconvert
\
&&
echo
"conda activate bioconvert"
>>
/root/.bashrc
RUN
apt update
&&
apt
install
-y
procps
RUN
apt update
&&
apt
install
-y
procps gcc zlib1g-dev
&&
pip3
install
bioconvert
==
${
BIOCONVERT_VERSION
}
CMD
[ "bash" ]
ENV
PATH /usr/local/envs/bioconvert/bin:/usr/local/condabin:$PATH
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