Commits · de76ce114b3f1770717b19a0c72432f4deb22581 · LBMC / nextflow · GitLab

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Oct 25, 2021
- danpos: allow collect for fastq input to determine if data are paired-end · de76ce11
  Laurent Modolo authored 3 years ago
  
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  de76ce11
Oct 21, 2021
- danpos: revert last commit · ada6bd95
  Laurent Modolo authored 3 years ago
  
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  ada6bd95
- danpos: rm wce wig from output · 38c12624
  Laurent Modolo authored 3 years ago
  
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  38c12624
Oct 20, 2021
- danpos: remove folder from the outputs · 6b84fab4
  Laurent Modolo authored 3 years ago
  
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  6b84fab4
- danspo: add overwrite: true for publishDir · da7ef3e7
  Laurent Modolo authored 3 years ago
  
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  da7ef3e7
Oct 19, 2021
- danspo: fix typo::72 · e2d1b99a
  Laurent Modolo authored 3 years ago
  
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  e2d1b99a
- dpos: fix typo :67 · 2084bdac
  Laurent Modolo authored 3 years ago
  
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  2084bdac
- danpos: re-add wce for dpos_bam · ac7209ac
  Laurent Modolo authored 3 years ago
  
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  ac7209ac
- dpos: remove bgpos for dpos · c3010d1a
  Laurent Modolo authored 3 years ago
  
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  c3010d1a
- danpos: replace peaks by positions for dpos outputs · 9021172a
  Laurent Modolo authored 3 years ago
  
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  9021172a
- danpos: rm position.summit not present for dpos · a2c7c8e5
  Laurent Modolo authored 3 years ago
  
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  a2c7c8e5
- danpos: rm "pooled" from output catch · 15de650f
  Laurent Modolo authored 3 years ago
  
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  15de650f
- danpos: remove wce for dpos to follow recommandations · 189e58db
  Laurent Modolo authored 3 years ago
  
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  189e58db
- danpos: add include for wig2_to_bedgraph2 · d0529f42
  Laurent Modolo authored 3 years ago
  
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  d0529f42
- danpos: add wig to bg convertion to each workflow · 83d5b95f
  Laurent Modolo authored 3 years ago
  
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  83d5b95f
- danpos: add xls to bed convertion in every process · 9db6166a
  Laurent Modolo authored 3 years ago
  
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  9db6166a
Oct 18, 2021
- danspo: add wig to bedgraph convertion · e9946c0d
  Laurent Modolo authored 3 years ago
  
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  e9946c0d
Oct 08, 2021
- fix include path in danpos and ucsc · 189c84a3
  Laurent Modolo authored 3 years ago
  
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  189c84a3
- ucsc: fix include path :6 · bdf483a0
  Laurent Modolo authored 3 years ago
  
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  bdf483a0
- danspo: fix position -> positions · 9a690027
  Laurent Modolo authored 3 years ago
  
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  9a690027
- danpos: fix awk cmd :276 · b009cf2a
  Laurent Modolo authored 3 years ago
  
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  b009cf2a
- danpos: change dpeak output cardinality · 318780aa
  Laurent Modolo authored 3 years ago
  
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  318780aa
- danpos: add xls > bed convertion · d17e7d00
  Laurent Modolo authored 3 years ago
  
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  d17e7d00
- danpos: rm typo :175 · 3df18d9c
  Laurent Modolo authored 3 years ago
  
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  3df18d9c
- danpos: rm pattern selection for publishDir · b7ed141a
  Laurent Modolo authored 3 years ago
  
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  b7ed141a
- danpos: switch back to ucsc for bg to wig convertion · 617ea76a
  Laurent Modolo authored 3 years ago
  
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  617ea76a
Oct 07, 2021
- danpos: switch from ucsc to bioconvert · c2f594c0
  Laurent Modolo authored 3 years ago
  
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  c2f594c0
Oct 05, 2021
- danpos: fix danpos line return · f6605a7d
  Laurent Modolo authored 3 years ago
  
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  f6605a7d
- danpos: remove trace of DSL1 · 86073f75
  Laurent Modolo authored 3 years ago
  
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  86073f75
- danpos: change publishDir capture pattern · 94bb6475
  Laurent Modolo authored 3 years ago
  
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  94bb6475
- danpos: fix file_id handling · ea629173
  Laurent Modolo authored 3 years ago
  
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  ea629173
- danpos: change channel cardinality · fa6ec732
  Laurent Modolo authored 3 years ago
  
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  fa6ec732
- danpos: fix channel name · a2cdd53d
  Laurent Modolo authored 3 years ago
  
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  a2cdd53d
Oct 04, 2021
- danpos: change bg to bw · d144d7db
  Laurent Modolo authored 3 years ago
  
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  d144d7db
- danpos: simplify bg2wig import · 9d6cde36
  Laurent Modolo authored 3 years ago
  
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  9d6cde36
Sep 29, 2021
- danpos: add bg input · 86af07f9
  Laurent Modolo authored 3 years ago
  
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  86af07f9
- nf_modules: add danpos · ffc9eb1e
  Laurent Modolo authored 3 years ago
  
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  ffc9eb1e