Commits · de76ce114b3f1770717b19a0c72432f4deb22581 · LBMC / nextflow

Oct 25, 2021
- danpos: allow collect for fastq input to determine if data are paired-end · de76ce11
  Laurent Modolo authored 3 years ago
  
  de76ce11
Oct 21, 2021
- danpos: revert last commit · ada6bd95
  Laurent Modolo authored 3 years ago
  
  ada6bd95
- ucsc: add missing index input :158 · d058e0bb
  Laurent Modolo authored 3 years ago
  
  d058e0bb
- danpos: rm wce wig from output · 38c12624
  Laurent Modolo authored 3 years ago
  
  38c12624
Oct 20, 2021
- danpos: remove folder from the outputs · 6b84fab4
  Laurent Modolo authored 3 years ago
  
  6b84fab4
- danspo: add overwrite: true for publishDir · da7ef3e7
  Laurent Modolo authored 3 years ago
  
  da7ef3e7
- agat: add params to convertion processes · 5911d120
  Laurent Modolo authored 3 years ago
  
  5911d120
Oct 19, 2021
- src/example_chipseq.nf: work in progress of chip-seq example · 2d3c99c6
  Laurent Modolo authored 3 years ago
  
  2d3c99c6
- ucsc: add bedgraph_to_wig.pl to Docker · 7a350349
  Laurent Modolo authored 3 years ago
  
  7a350349
- ucsc: wig_to_bedgraph replace by an awk cmd · 463bb3b0
  Laurent Modolo authored 3 years ago
  
  463bb3b0
- ucsc: fix wig_to_bedgraph processes · 719ddc7d
  Laurent Modolo authored 3 years ago
  
  719ddc7d
- danspo: fix typo::72 · e2d1b99a
  Laurent Modolo authored 3 years ago
  
  e2d1b99a
- dpos: fix typo :67 · 2084bdac
  Laurent Modolo authored 3 years ago
  
  2084bdac
- danpos: re-add wce for dpos_bam · ac7209ac
  Laurent Modolo authored 3 years ago
  
  ac7209ac
- dpos: remove bgpos for dpos · c3010d1a
  Laurent Modolo authored 3 years ago
  
  c3010d1a
- danpos: replace peaks by positions for dpos outputs · 9021172a
  Laurent Modolo authored 3 years ago
  
  9021172a
- danpos: rm position.summit not present for dpos · a2c7c8e5
  Laurent Modolo authored 3 years ago
  
  a2c7c8e5
- danpos: rm "pooled" from output catch · 15de650f
  Laurent Modolo authored 3 years ago
  
  15de650f
- uscs: fix of wig_to_bedgraph · 610ef711
  Laurent Modolo authored 3 years ago
  
  610ef711
- danpos: remove wce for dpos to follow recommandations · 189e58db
  Laurent Modolo authored 3 years ago
  
  189e58db
- ucsc: fix output names :74 · 3f7b66ba
  Laurent Modolo authored 3 years ago
  
  3f7b66ba
- danpos: add include for wig2_to_bedgraph2 · d0529f42
  Laurent Modolo authored 3 years ago
  
  d0529f42
- danpos: add wig to bg convertion to each workflow · 83d5b95f
  Laurent Modolo authored 3 years ago
  
  83d5b95f
- ucsc: add wig2_to_bedgraph2 · 1aeb887a
  Laurent Modolo authored 3 years ago
  
  1aeb887a
- danpos: add xls to bed convertion in every process · 9db6166a
  Laurent Modolo authored 3 years ago
  
  9db6166a
Oct 18, 2021
- ucsc: rm wig2bedgraph process · 53ac9470
  Laurent Modolo authored 3 years ago
  
  53ac9470
- danspo: add wig to bedgraph convertion · e9946c0d
  Laurent Modolo authored 3 years ago
  
  e9946c0d
- ucsc: add wig2bedgraph process · 42e06407
  Laurent Modolo authored 3 years ago
  
  42e06407
Oct 15, 2021
- agat: add gff_to_gtf convertion · 4a29c9e0
  Laurent Modolo authored 3 years ago
  
  4a29c9e0
Oct 14, 2021
- ucsc: fix typo :40 · 71efa504
  Laurent Modolo authored 3 years ago
  
  71efa504
- ucsc: fix output name :52 · f88be256
  Laurent Modolo authored 3 years ago
  
  f88be256
- ucsc: add wig_to_bedgraph · 9aa94d39
  Laurent Modolo authored 3 years ago
  
  9aa94d39
Oct 12, 2021
- docker: add crossbuild for every tools · b25300b2
  Laurent Modolo authored 3 years ago
  
  b25300b2
Oct 11, 2021
- docker: add crossbuild for every tools · c7d32aaa
  Laurent Modolo authored 3 years ago
  
  c7d32aaa
- docker: add crossbuild for every tools · c3fac15d
  Laurent Modolo authored 3 years ago
  
  c3fac15d
- docker: rasusa add cross building for arm · 149987de
  Laurent Modolo authored 3 years ago
  
  149987de
Oct 08, 2021
- agat: unzip gz file · 39775a6c
  Laurent Modolo authored 3 years ago
  
  39775a6c
- agat: group by cds · 538ff01f
  Laurent Modolo authored 3 years ago
  
  538ff01f
- agat: add main.nf · 81f280a0
  Laurent Modolo authored 3 years ago
  
  81f280a0
- docker: add agat 0.8.0 · b00d2558
  Laurent Modolo authored 3 years ago
  
  b00d2558