agat: group by cds

538ff01f · Laurent Modolo · 81f280a0 · 538ff01f
Verified Commit 538ff01f authored 3 years ago by Laurent Modolo
--- a/src/nf_modules/agat/main.nf
+++ b/src/nf_modules/agat/main.nf
@@ -18,6 +18,6 @@ process gff_to_bed {

  script:
 """
-agat_convert_sp_gff2bed.pl --gff ${gff} -o ${gff.simpleName}.bed
+agat_convert_sp_gff2bed.pl --gff ${gff} --sub cds -o ${gff.simpleName}.bed
 """
 }
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