Commits · d1acbf15aa7177a9ae9dbceffd38d76c02f9bc1f · LBMC / nextflow · GitLab

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Mar 07, 2022
- src/example_marseq.nf: update default cmd to v98 of genome · d1acbf15
  Laurent Modolo authored 3 years ago
  
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  d1acbf15
Mar 01, 2022
- hisat2: remove samtools report · c6865206
  Laurent Modolo authored 3 years ago
  
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  c6865206
- hisat2: change report file name · 170a745c
  Laurent Modolo authored 3 years ago
  
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  170a745c
- hisat2: change report file name · 600ee64e
  Laurent Modolo authored 3 years ago
  
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  600ee64e
Feb 28, 2022
- bedtools: change bg file to bed file · 30bc832d
  Laurent Modolo authored 3 years ago
  
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  30bc832d
- src/nf_modules/hisat2/main.nf · d5cf091f
  Laurent Modolo authored 3 years ago
  
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  d5cf091f
Feb 24, 2022
- docker: sanity fix typo · a4e87410
  Laurent Modolo authored 3 years ago
  
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  a4e87410
- Close merge request #27 · e2454d73
  Laurent Modolo authored 3 years ago
  
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  e2454d73
Jan 06, 2022
- hisat2: add main.nf · b6110260
  Laurent Modolo authored 3 years ago
  
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  b6110260
- Docker: add histat2 2.2.1 · 1011a2a3
  Laurent Modolo authored 3 years ago
  
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  1011a2a3
- Docker: add samtools 1.14 · 5090e8a5
  Laurent Modolo authored 3 years ago
  
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  5090e8a5
Nov 02, 2021
- multiqc: remove view · 49eb0ea8
  Laurent Modolo authored 3 years ago
  
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  49eb0ea8
- multiqc: better handling of List as input · aaec95a6
  Laurent Modolo authored 3 years ago
  
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  aaec95a6
- samtools: add compatbility with mutlqc · b87a994a
  Laurent Modolo authored 3 years ago
  
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  b87a994a
- samtools and picardtools: add compatibility with mutliqc · e9175cbd
  Laurent Modolo authored 3 years ago
  
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  e9175cbd
- samtools: rename flagstat log for multiqc · a7358e47
  Laurent Modolo authored 3 years ago
  
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  a7358e47
- mutliqc: Dockerfile switch from debian to python img · 6a448ad6
  Laurent Modolo authored 3 years ago
  
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  6a448ad6
- multiqc: update 1.9 -> 1.11 · bc023a73
  Laurent Modolo authored 3 years ago
  
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  bc023a73
- multiqc: remove view · fd6c4ae7
  Laurent Modolo authored 3 years ago
  
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  fd6c4ae7
- mutliqc.nf: fix flatten procedure · a92d2e02
  Laurent Modolo authored 3 years ago
  
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  a92d2e02
Oct 26, 2021
- danpos: fix typo :164 · f8dba601
  Laurent Modolo authored 3 years ago
  
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  f8dba601
- danpos: fix typo :153 · ffc99bdc
  Laurent Modolo authored 3 years ago
  
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  ffc99bdc
- danpos: include bigwig_to_wig :6 · 0acd330e
  Laurent Modolo authored 3 years ago
  
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  0acd330e
- danpos: rename dpos_bw_no_b :153 · 0021af6c
  Laurent Modolo authored 3 years ago
  
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  0021af6c
- danpos: add dpos_bw_no_b process · f1a4012f
  Laurent Modolo authored 3 years ago
  
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  f1a4012f
- danpos: add -b to dpos_wig · f8760e45
  Laurent Modolo authored 3 years ago
  
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  f8760e45
- danspo: fix dpos_bw wig output · c87853f5
  Laurent Modolo authored 3 years ago
  
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  c87853f5
- danspo: fix dpos_wig output · 9351da4f
  Laurent Modolo authored 3 years ago
  
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  9351da4f
- uscs: fix typo in input definition :19 · 2ac13df4
  Laurent Modolo authored 3 years ago
  
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  2ac13df4
- danpos: fix typo :131 · 5acf2c2d
  Laurent Modolo authored 3 years ago
  
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  5acf2c2d
Oct 25, 2021
- ucsc: fix typos in inputs channel · 4d0a4530
  Laurent Modolo authored 3 years ago
  
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  4d0a4530
- uscs: rename bigwig_to_bedgraph to bigwig1_to_bedgraph1 · da83dcb8
  Laurent Modolo authored 3 years ago
  
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  da83dcb8
- danspo: rename channel bedgraph -> bg · f24f02d7
  Laurent Modolo authored 3 years ago
  
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  f24f02d7
- ucsc: fix typo :53 & :69 · 30d50acd
  Laurent Modolo authored 3 years ago
  
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  30d50acd
- ucsc: fix typo :66 & :49 · 834e9f81
  Laurent Modolo authored 3 years ago
  
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  834e9f81
- danpos: fix call to wig_to_bedgraph · d042ca7d
  Laurent Modolo authored 3 years ago
  
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  d042ca7d
- uscs: modify wig_to_bedgraph · 66d36c04
  Laurent Modolo authored 3 years ago
  
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  66d36c04
- danpos: fix fastq imput cardinality · a287ac99
  Laurent Modolo authored 3 years ago
  
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  a287ac99
- danpos: change the way to compute fastq size · bc804b31
  Laurent Modolo authored 3 years ago
  
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  bc804b31
- danpos: allow collect for fastq input to determine if data are paired-end · de76ce11
  Laurent Modolo authored 3 years ago
  
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  de76ce11