Commits · b9d4fdda93bcaca737b9929d2b916a3907785a29 · LBMC / nextflow · GitLab

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Jan 29, 2021
- nf_modules: update output tuple to handle list as file_id · 28a831bf
  Laurent Modolo authored 4 years ago
  
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  28a831bf
Jan 22, 2021
- nf_module: set index to be the 2nd input for mapping · cecad357
  Laurent Modolo authored 4 years ago
  
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  cecad357
Jan 20, 2021
- nf_modules: add kallisto to DSL2 · 6706a92d
  Laurent Modolo authored 4 years ago
  
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  6706a92d
Oct 09, 2020
- nf_module update practical example to use withLabel instead of withName · 5cdad1d7
  Laurent Modolo authored 4 years ago
  
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  5cdad1d7
Apr 27, 2020
- remove copying for psmn config · 87c79ae2
  Laurent Modolo authored 5 years ago
  
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  87c79ae2
Apr 20, 2020
- nf_modules: disable scratch for psmn · 8d47aa31
  Laurent Modolo authored 5 years ago
  
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  8d47aa31
- nf_modules: switch psmn to singularity · 670315f5
  Laurent Modolo authored 5 years ago
  
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  670315f5
Apr 17, 2020
- update psmn config to new queues · c116038b
  Laurent Modolo authored 5 years ago
  
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  c116038b
Jan 17, 2020
- kallisto indexing.config: fix typo · 195e5ce1
  Laurent Modolo authored 5 years ago
  
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  195e5ce1
Nov 28, 2019
- *.config: fix singularity cacheDir path for in2p3 · 30b52060
  Laurent Modolo authored 5 years ago
  
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  30b52060
Nov 27, 2019
- add .signularity_in2p3 folder to fix lock problem in nf · 32312418
  Laurent Modolo authored 5 years ago
  
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  32312418
Nov 18, 2019
- version 0.4.0 · 4734f32a
  Laurent Modolo authored 5 years ago
  
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  4734f32a
Nov 13, 2019
- nf_modules: rm ccin2p3_conda section in config files · cbe80128
  Laurent Modolo authored 5 years ago
  
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  cbe80128
Nov 06, 2019
- conda_psmn: fix path of the scripts in configs files · b43a5a48
  Laurent Modolo authored 5 years ago
  
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  b43a5a48
- nf: change psmn config to use conda · e58b21b6
  Laurent Modolo authored 5 years ago
  
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  e58b21b6
Nov 05, 2019
- singularity: update configs to use docker hub and specified cacheDir · 0d93daf3
  Laurent Modolo authored 5 years ago
  
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  0d93daf3
- docker: change config file to use lbmc/ docker repository · 3ced2125
  Laurent Modolo authored 5 years ago
  
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  3ced2125
May 21, 2019
- nf modules singularity: remove logs for in2p3 · f8fe5b84
  Laurent Modolo authored 6 years ago
  
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  f8fe5b84
May 20, 2019
- nf modules: adapt ccin2p3 profile to use singularity · 6cccaa96
  Laurent Modolo authored 6 years ago
  
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  6cccaa96
- nf modules: add ccin2p3 profile · e170dad3
  Laurent Modolo authored 6 years ago
  
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  e170dad3
- nf module: ccin2p3 profile become cc2inp3_conda · 78189351
  Laurent Modolo authored 6 years ago
  
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  78189351
- in2p3 test: make singularity default for ccin2p3 · 09e2b2fc
  Laurent Modolo authored 6 years ago
  
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  09e2b2fc
- in2p3 test: change pos of --bind option for singularity... · 883c3c3e
  Laurent Modolo authored 6 years ago
  
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  883c3c3e
- in2p3 test: add singularity bind option · 0f3a7c43
  Laurent Modolo authored 6 years ago
  
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  0f3a7c43
- in2p3 test: fix beforeScript config · f6921da8
  Laurent Modolo authored 6 years ago
  
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  f6921da8
- in2p3: test singylarity mount bind config · b6101c65
  Laurent Modolo authored 6 years ago
  
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  b6101c65
- in2p3: test singularity automount · 854a1709
  Laurent Modolo authored 6 years ago
  
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  854a1709
- in2p3 singularity: fix logs path · 9e61e551
  Laurent Modolo authored 6 years ago
  
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  9e61e551
- test in2p3: add more details in mail report · b7d9581d
  Laurent Modolo authored 6 years ago
  
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  b7d9581d
- singularity test at in2p3 · 803af8b7
  Laurent Modolo authored 6 years ago
  
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  803af8b7
May 15, 2019
- fix ccin2p3 profile for loading miniconda3 · 565ffad2
  Laurent Modolo authored 6 years ago
  
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  565ffad2
May 07, 2019
- nf_modules: update ccin2p3 config · 99eb8705
  Laurent Modolo authored 6 years ago
  
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  99eb8705
May 03, 2019
- kallisto: indexing config sh conda env instead of source · 3da0a73c
  Laurent Modolo authored 6 years ago
  
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  3da0a73c
- kallisto: indexing config add error log for in2p3 · 2547f52d
  Laurent Modolo authored 6 years ago
  
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  2547f52d
May 02, 2019
- nextflow: update in2p3 test for demon queue · bf418ede
  Laurent Modolo authored 6 years ago
  
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  bf418ede
Apr 16, 2019
- kallisto: try to remove option for in2p3 qsub · 6a9d1f73
  Laurent Modolo authored 6 years ago
  
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  6a9d1f73
- kallisto: index.config test mc_huge for indexing · 3cb0f062
  Laurent Modolo authored 6 years ago
  
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  3cb0f062
- kallisto: indexing.config add queue for in2p3 · aa5dbf3d
  Laurent Modolo authored 6 years ago
  
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  aa5dbf3d
- kallisto: add ccin2p3_conda profile for indexing · e069611c
  Laurent Modolo authored 6 years ago
  
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  e069611c
- kallisto: add in2p3 config · e16a1a9f
  Laurent Modolo authored 6 years ago
  
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  e16a1a9f