Commits · b43a5a48cb953afedc1db582b2812fd8003a9cfb · LBMC / nextflow · GitLab

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Nov 06, 2019
- conda_psmn: fix path of the scripts in configs files · b43a5a48
  Laurent Modolo authored 5 years ago
  
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  b43a5a48
- nf: change psmn config to use conda · e58b21b6
  Laurent Modolo authored 5 years ago
  
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  e58b21b6
Nov 05, 2019
- singularity: update configs to use docker hub and specified cacheDir · 0d93daf3
  Laurent Modolo authored 5 years ago
  
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  0d93daf3
- docker: change config file to use lbmc/ docker repository · 3ced2125
  Laurent Modolo authored 5 years ago
  
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  3ced2125
May 21, 2019
- nf modules singularity: remove logs for in2p3 · f8fe5b84
  Laurent Modolo authored 5 years ago
  
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  f8fe5b84
May 20, 2019
- nf modules: adapt ccin2p3 profile to use singularity · 6cccaa96
  Laurent Modolo authored 5 years ago
  
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  6cccaa96
- nf modules: add ccin2p3 profile · e170dad3
  Laurent Modolo authored 5 years ago
  
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  e170dad3
- nf module: ccin2p3 profile become cc2inp3_conda · 78189351
  Laurent Modolo authored 5 years ago
  
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  78189351
- in2p3 test: make singularity default for ccin2p3 · 09e2b2fc
  Laurent Modolo authored 5 years ago
  
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  09e2b2fc
- in2p3 test: change pos of --bind option for singularity... · 883c3c3e
  Laurent Modolo authored 5 years ago
  
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  883c3c3e
- in2p3 test: add singularity bind option · 0f3a7c43
  Laurent Modolo authored 5 years ago
  
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  0f3a7c43
- in2p3 test: fix beforeScript config · f6921da8
  Laurent Modolo authored 5 years ago
  
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  f6921da8
- in2p3: test singylarity mount bind config · b6101c65
  Laurent Modolo authored 5 years ago
  
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  b6101c65
- in2p3: test singularity automount · 854a1709
  Laurent Modolo authored 5 years ago
  
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  854a1709
- in2p3 singularity: fix logs path · 9e61e551
  Laurent Modolo authored 5 years ago
  
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  9e61e551
- test in2p3: add more details in mail report · b7d9581d
  Laurent Modolo authored 5 years ago
  
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  b7d9581d
- singularity test at in2p3 · 803af8b7
  Laurent Modolo authored 5 years ago
  
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  803af8b7
May 15, 2019
- fix ccin2p3 profile for loading miniconda3 · 565ffad2
  Laurent Modolo authored 5 years ago
  
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  565ffad2
May 07, 2019
- nf_modules: update ccin2p3 config · 99eb8705
  Laurent Modolo authored 5 years ago
  
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  99eb8705
May 03, 2019
- kallisto: indexing config sh conda env instead of source · 3da0a73c
  Laurent Modolo authored 5 years ago
  
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  3da0a73c
- kallisto: indexing config add error log for in2p3 · 2547f52d
  Laurent Modolo authored 5 years ago
  
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  2547f52d
May 02, 2019
- nextflow: update in2p3 test for demon queue · bf418ede
  Laurent Modolo authored 5 years ago
  
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  bf418ede
Apr 16, 2019
- kallisto: try to remove option for in2p3 qsub · 6a9d1f73
  Laurent Modolo authored 5 years ago
  
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  6a9d1f73
- kallisto: index.config test mc_huge for indexing · 3cb0f062
  Laurent Modolo authored 5 years ago
  
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  3cb0f062
- kallisto: indexing.config add queue for in2p3 · aa5dbf3d
  Laurent Modolo authored 5 years ago
  
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  aa5dbf3d
- kallisto: add ccin2p3_conda profile for indexing · e069611c
  Laurent Modolo authored 5 years ago
  
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  e069611c
- kallisto: add in2p3 config · e16a1a9f
  Laurent Modolo authored 5 years ago
  
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  e16a1a9f
- change .sif to .img for singularity img · a972f993
  Laurent Modolo authored 5 years ago
  
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  a972f993
Apr 12, 2019
- kallisto: fix singularity tests · 70dc013f
  Laurent Modolo authored 5 years ago
  
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  70dc013f
- kallisto: config for in2p3, add /usr/bin to path · e636850a
  Laurent Modolo authored 5 years ago
  
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  e636850a
- kallisto: add verbose to indexing.nf · 5aaa2669
  Laurent Modolo authored 5 years ago
  
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  5aaa2669
- kallisto: remove bash config · 5fca29e5
  Laurent Modolo authored 5 years ago
  
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  5fca29e5
- kallisto: update in2p3 config · 2119e7bb
  Laurent Modolo authored 5 years ago
  
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  2119e7bb
- kallisto: add info for in2p3 scratch · e943bb11
  Laurent Modolo authored 5 years ago
  
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  e943bb11
- kallisto: test of in2p3 config file · 0304aca0
  Laurent Modolo authored 5 years ago
  
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  0304aca0
Mar 22, 2019
- psmn: remove mail report from config files · 016b5b22
  Laurent Modolo authored 6 years ago
  
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  016b5b22
Mar 06, 2019
- nf_modules: add singularity in config files and tests.sh · f720ba52
  Laurent Modolo authored 6 years ago
  
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  f720ba52
- cutadapt: add singularity to nf files and add -resume to all tests.sh · 60040ed6
  Laurent Modolo authored 6 years ago
  
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  60040ed6
- nf_modules: update config files to match psmn lowercase module names · 80b5c871
  Laurent Modolo authored 6 years ago
  
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  80b5c871
Mar 04, 2019
- update link for all modules names to lowercase · 9b037d38
  Laurent Modolo authored 6 years ago
  
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  9b037d38