Commits · ac7209acb6766ce4e6257bc9c69e9a2875a58b7e · LBMC / nextflow · GitLab

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Oct 19, 2021
- danpos: re-add wce for dpos_bam · ac7209ac
  Laurent Modolo authored 3 years ago
  
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  ac7209ac
- dpos: remove bgpos for dpos · c3010d1a
  Laurent Modolo authored 3 years ago
  
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  c3010d1a
- danpos: replace peaks by positions for dpos outputs · 9021172a
  Laurent Modolo authored 3 years ago
  
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  9021172a
- danpos: rm position.summit not present for dpos · a2c7c8e5
  Laurent Modolo authored 3 years ago
  
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  a2c7c8e5
- danpos: rm "pooled" from output catch · 15de650f
  Laurent Modolo authored 3 years ago
  
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  15de650f
- uscs: fix of wig_to_bedgraph · 610ef711
  Laurent Modolo authored 3 years ago
  
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  610ef711
- danpos: remove wce for dpos to follow recommandations · 189e58db
  Laurent Modolo authored 3 years ago
  
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  189e58db
- ucsc: fix output names :74 · 3f7b66ba
  Laurent Modolo authored 3 years ago
  
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  3f7b66ba
- danpos: add include for wig2_to_bedgraph2 · d0529f42
  Laurent Modolo authored 3 years ago
  
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  d0529f42
- danpos: add wig to bg convertion to each workflow · 83d5b95f
  Laurent Modolo authored 3 years ago
  
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  83d5b95f
- ucsc: add wig2_to_bedgraph2 · 1aeb887a
  Laurent Modolo authored 3 years ago
  
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  1aeb887a
- danpos: add xls to bed convertion in every process · 9db6166a
  Laurent Modolo authored 3 years ago
  
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  9db6166a
Oct 18, 2021
- ucsc: rm wig2bedgraph process · 53ac9470
  Laurent Modolo authored 3 years ago
  
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  53ac9470
- danspo: add wig to bedgraph convertion · e9946c0d
  Laurent Modolo authored 3 years ago
  
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  e9946c0d
- ucsc: add wig2bedgraph process · 42e06407
  Laurent Modolo authored 3 years ago
  
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  42e06407
Oct 15, 2021
- agat: add gff_to_gtf convertion · 4a29c9e0
  Laurent Modolo authored 3 years ago
  
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  4a29c9e0
Oct 14, 2021
- ucsc: fix typo :40 · 71efa504
  Laurent Modolo authored 3 years ago
  
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  71efa504
- ucsc: fix output name :52 · f88be256
  Laurent Modolo authored 3 years ago
  
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  f88be256
- ucsc: add wig_to_bedgraph · 9aa94d39
  Laurent Modolo authored 3 years ago
  
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  9aa94d39
Oct 12, 2021
- docker: add crossbuild for every tools · b25300b2
  Laurent Modolo authored 3 years ago
  
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  b25300b2
Oct 11, 2021
- docker: add crossbuild for every tools · c7d32aaa
  Laurent Modolo authored 3 years ago
  
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  c7d32aaa
- docker: add crossbuild for every tools · c3fac15d
  Laurent Modolo authored 3 years ago
  
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  c3fac15d
- docker: rasusa add cross building for arm · 149987de
  Laurent Modolo authored 3 years ago
  
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  149987de
Oct 08, 2021
- agat: unzip gz file · 39775a6c
  Laurent Modolo authored 3 years ago
  
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  39775a6c
- agat: group by cds · 538ff01f
  Laurent Modolo authored 3 years ago
  
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  538ff01f
- agat: add main.nf · 81f280a0
  Laurent Modolo authored 3 years ago
  
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  81f280a0
- docker: add agat 0.8.0 · b00d2558
  Laurent Modolo authored 3 years ago
  
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  b00d2558
- Docker: ucsc add gff to bed script · e1117c52
  Laurent Modolo authored 3 years ago
  
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  e1117c52
- ucsc: fix fasta missing variable · a04bb103
  Laurent Modolo authored 3 years ago
  
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  a04bb103
- fix include path in danpos and ucsc · 189c84a3
  Laurent Modolo authored 3 years ago
  
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  189c84a3
- ucsc: fix include path :6 · bdf483a0
  Laurent Modolo authored 3 years ago
  
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  bdf483a0
- ucsc: add chromsize for wigToBigWig · 908ee6cd
  Laurent Modolo authored 3 years ago
  
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  908ee6cd
- ucsc: fix varible name :97 · 7db5eb02
  Laurent Modolo authored 3 years ago
  
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  7db5eb02
- danspo: fix position -> positions · 9a690027
  Laurent Modolo authored 3 years ago
  
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  9a690027
- danpos: fix awk cmd :276 · b009cf2a
  Laurent Modolo authored 3 years ago
  
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  b009cf2a
- danpos: change dpeak output cardinality · 318780aa
  Laurent Modolo authored 3 years ago
  
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  318780aa
- ucsc: add wigtobigwig convertion · 47eba2c4
  Laurent Modolo authored 3 years ago
  
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  47eba2c4
- danpos: add xls > bed convertion · d17e7d00
  Laurent Modolo authored 3 years ago
  
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  d17e7d00
- danpos: rm typo :175 · 3df18d9c
  Laurent Modolo authored 3 years ago
  
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  3df18d9c
- danpos: rm pattern selection for publishDir · b7ed141a
  Laurent Modolo authored 3 years ago
  
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  b7ed141a