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Verified Commit a04bb103 authored by Laurent Modolo's avatar Laurent Modolo
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ucsc: fix fasta missing variable

parent 189c84a3
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......@@ -117,8 +117,8 @@ process wig_to_bigwig_sub {
script:
"""
cut -f 1,2 ${fasta_idx} > ${fasta}.sizes
wigToBigWig -clip ${w} ${fasta}.sizes ${w.simpleName}.bw
cut -f 1,2 ${fasta_idx} > ${fasta_idx.simpleName}.sizes
wigToBigWig -clip ${w} ${fasta_idx.simpleName}.sizes ${w.simpleName}.bw
"""
}
......@@ -156,8 +156,8 @@ process wig2_to_bigwig2_sub {
script:
"""
cut -f 1,2 ${fasta_idx} > ${fasta}.sizes
wigToBigWig -clip ${w_a} ${fasta}.sizes ${w_a.simpleName}.bw
wigToBigWig -clip ${w_b} ${fasta}.sizes ${w_b.simpleName}.bw
cut -f 1,2 ${fasta_idx} > ${fasta_idx.simpleName}.sizes
wigToBigWig -clip ${w_a} ${fasta_idx.simpleName}.sizes ${w_a.simpleName}.bw
wigToBigWig -clip ${w_b} ${fasta_idx.simpleName}.sizes ${w_b.simpleName}.bw
"""
}
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