diff --git a/src/nf_modules/ucsc/main.nf b/src/nf_modules/ucsc/main.nf index 37fed303fb0ca04847ef9c947f00ca28467e31cf..fbb166ef579072873da23b88542b13b5b6891050 100644 --- a/src/nf_modules/ucsc/main.nf +++ b/src/nf_modules/ucsc/main.nf @@ -117,8 +117,8 @@ process wig_to_bigwig_sub { script: """ -cut -f 1,2 ${fasta_idx} > ${fasta}.sizes -wigToBigWig -clip ${w} ${fasta}.sizes ${w.simpleName}.bw +cut -f 1,2 ${fasta_idx} > ${fasta_idx.simpleName}.sizes +wigToBigWig -clip ${w} ${fasta_idx.simpleName}.sizes ${w.simpleName}.bw """ } @@ -156,8 +156,8 @@ process wig2_to_bigwig2_sub { script: """ -cut -f 1,2 ${fasta_idx} > ${fasta}.sizes -wigToBigWig -clip ${w_a} ${fasta}.sizes ${w_a.simpleName}.bw -wigToBigWig -clip ${w_b} ${fasta}.sizes ${w_b.simpleName}.bw +cut -f 1,2 ${fasta_idx} > ${fasta_idx.simpleName}.sizes +wigToBigWig -clip ${w_a} ${fasta_idx.simpleName}.sizes ${w_a.simpleName}.bw +wigToBigWig -clip ${w_b} ${fasta_idx.simpleName}.sizes ${w_b.simpleName}.bw """ } \ No newline at end of file