Commits · 99349b14ae334c1addabad1ae01f4b78d187cbf6 · LBMC / nextflow · GitLab

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May 19, 2022
- Merge: 88f47c9 (nanopipe/master) · 99349b14
  Laurent Modolo authored 2 years ago
  
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  99349b14
May 12, 2022
- src/in2p3.pbs : remove unnessary variable · 4194f0de
  Laurent Modolo authored 2 years ago
  
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- working config and daemon job for in2p3 · 8b7e3616
  Laurent Modolo authored 2 years ago
  
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  8b7e3616
- nextflow.config: change ccin2p3 to slurm · e0b48dea
  Laurent Modolo authored 2 years ago
  
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  e0b48dea
May 09, 2022
- gffread: don't delete original gz · 4767397f
  Laurent Modolo authored 2 years ago
  
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  4767397f
May 06, 2022
- Merge: 23ddf03 (nanopipe/master) · d5f43633
  Laurent Modolo authored 2 years ago
  
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  d5f43633
Apr 28, 2022
- Close merge request #28 · 966a31ee
  Laurent Modolo authored 2 years ago
  
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  966a31ee
- htseq/1.99.2/Dockerfile: fix typo :2 · fa92e48e
  Laurent Modolo authored 2 years ago
  
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  fa92e48e
- Merge crey02/nextflow-add_htseq to close #29 · f27bf148
  Laurent Modolo authored 2 years ago
  
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  f27bf148
Apr 14, 2022
- src/nf_modules/gffread/main.nf: fix typo :58 · da99648b
  Laurent Modolo authored 2 years ago
  
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  da99648b
- src/nf_modules/gffread/main.nf: fix typo :59 · cd7e4a19
  Laurent Modolo authored 2 years ago
  
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  cd7e4a19
Mar 22, 2022
- gffread: fix typo :58 · 566d96a1
  Laurent Modolo authored 2 years ago
  
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- gffread: unzip gtf for spliced_cds process · 9db26e04
  Laurent Modolo authored 2 years ago
  
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- gffread: unzip input fasta · fbd31a43
  Laurent Modolo authored 2 years ago
  
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- picard: add normalize_fasta process · 965d869e
  Laurent Modolo authored 2 years ago
  
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  965d869e
- gffread: simplify extract cds process · 0ceb0fc5
  Laurent Modolo authored 2 years ago
  
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  0ceb0fc5
- gffread: escape $ :61 · cd5218a0
  Laurent Modolo authored 2 years ago
  
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  cd5218a0
- gffread: add spliced_cds process · 018a0af2
  Laurent Modolo authored 2 years ago
  
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  018a0af2
Mar 14, 2022
- src/nf_modules/hisat2/main.nf: remove default parameters · 92058047
  Laurent Modolo authored 3 years ago
  
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  92058047
Mar 07, 2022
- src/example_marseq.nf: update default cmd to v98 of genome · d1acbf15
  Laurent Modolo authored 3 years ago
  
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Mar 01, 2022
- hisat2: remove samtools report · c6865206
  Laurent Modolo authored 3 years ago
  
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- hisat2: change report file name · 170a745c
  Laurent Modolo authored 3 years ago
  
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- hisat2: change report file name · 600ee64e
  Laurent Modolo authored 3 years ago
  
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  600ee64e
Feb 28, 2022
- bedtools: change bg file to bed file · 30bc832d
  Laurent Modolo authored 3 years ago
  
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  30bc832d
- src/nf_modules/hisat2/main.nf · d5cf091f
  Laurent Modolo authored 3 years ago
  
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Feb 24, 2022
- docker: sanity fix typo · a4e87410
  Laurent Modolo authored 3 years ago
  
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- Close merge request #27 · e2454d73
  Laurent Modolo authored 3 years ago
  
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  e2454d73
Jan 06, 2022
- hisat2: add main.nf · b6110260
  Laurent Modolo authored 3 years ago
  
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  b6110260
- Docker: add histat2 2.2.1 · 1011a2a3
  Laurent Modolo authored 3 years ago
  
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  1011a2a3
- Docker: add samtools 1.14 · 5090e8a5
  Laurent Modolo authored 3 years ago
  
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Nov 30, 2021
- Close merge request if [[ -z ]]; then ; echo test; fi · 7daa2241
  Laurent Modolo authored 3 years ago
  
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  7daa2241
Nov 02, 2021
- multiqc: remove view · 49eb0ea8
  Laurent Modolo authored 3 years ago
  
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- multiqc: better handling of List as input · aaec95a6
  Laurent Modolo authored 3 years ago
  
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- samtools: add compatbility with mutlqc · b87a994a
  Laurent Modolo authored 3 years ago
  
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- samtools and picardtools: add compatibility with mutliqc · e9175cbd
  Laurent Modolo authored 3 years ago
  
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- samtools: rename flagstat log for multiqc · a7358e47
  Laurent Modolo authored 3 years ago
  
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- mutliqc: Dockerfile switch from debian to python img · 6a448ad6
  Laurent Modolo authored 3 years ago
  
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- multiqc: update 1.9 -> 1.11 · bc023a73
  Laurent Modolo authored 3 years ago
  
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  bc023a73
- multiqc: remove view · fd6c4ae7
  Laurent Modolo authored 3 years ago
  
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  fd6c4ae7
- mutliqc.nf: fix flatten procedure · a92d2e02
  Laurent Modolo authored 3 years ago
  
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  a92d2e02