Commits · 8d47aa31bcefbe0b102f4343ab2a38414c8da47a · LBMC / nextflow · GitLab

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Apr 20, 2020
- nf_modules: disable scratch for psmn · 8d47aa31
  Laurent Modolo authored 4 years ago
  
  Unverified
  
  8d47aa31
- nf_modules: switch psmn to singularity · 670315f5
  Laurent Modolo authored 4 years ago
  
  Unverified
  
  670315f5
Apr 17, 2020
- update psmn config to new queues · c116038b
  Laurent Modolo authored 4 years ago
  
  Unverified
  
  c116038b
Dec 13, 2019
- fasta_from_bed.config: remove ${CONDA_ENVS} · 05e1de4c
  Laurent Modolo authored 5 years ago
  
  Unverified
  
  05e1de4c
Nov 28, 2019
- *.config: fix singularity cacheDir path for in2p3 · 30b52060
  Laurent Modolo authored 5 years ago
  
  Unverified
  
  30b52060
Nov 27, 2019
- add .signularity_in2p3 folder to fix lock problem in nf · 32312418
  Laurent Modolo authored 5 years ago
  
  Unverified
  
  32312418
Nov 18, 2019
- version 0.4.0 · 4734f32a
  Laurent Modolo authored 5 years ago
  
  Unverified
  
  4734f32a
Nov 13, 2019
- nf_modules: rm ccin2p3_conda section in config files · cbe80128
  Laurent Modolo authored 5 years ago
  
  Unverified
  
  cbe80128
Nov 06, 2019
- conda_psmn: fix path of the scripts in configs files · b43a5a48
  Laurent Modolo authored 5 years ago
  
  Unverified
  
  b43a5a48
- nf: change psmn config to use conda · e58b21b6
  Laurent Modolo authored 5 years ago
  
  Unverified
  
  e58b21b6
Nov 05, 2019
- singularity: update configs to use docker hub and specified cacheDir · 0d93daf3
  Laurent Modolo authored 5 years ago
  
  Unverified
  
  0d93daf3
- docker: change config file to use lbmc/ docker repository · 3ced2125
  Laurent Modolo authored 5 years ago
  
  Unverified
  
  3ced2125
May 21, 2019
- nf modules singularity: remove logs for in2p3 · f8fe5b84
  Laurent Modolo authored 5 years ago
  
  Verified
  
  f8fe5b84
May 20, 2019
- nf modules: adapt ccin2p3 profile to use singularity · 6cccaa96
  Laurent Modolo authored 5 years ago
  
  Verified
  
  6cccaa96
- nf modules: add ccin2p3 profile · e170dad3
  Laurent Modolo authored 5 years ago
  
  Verified
  
  e170dad3
- nf module: ccin2p3 profile become cc2inp3_conda · 78189351
  Laurent Modolo authored 5 years ago
  
  Verified
  
  78189351
May 17, 2019
- config files: updater monocore queues for psmn · 21a8f8b8
  Laurent Modolo authored 5 years ago
  
  Verified
  
  21a8f8b8
May 15, 2019
- fix ccin2p3 profile for loading miniconda3 · 565ffad2
  Laurent Modolo authored 5 years ago
  
  Verified
  
  565ffad2
May 07, 2019
- nf_modules: update ccin2p3 config · 99eb8705
  Laurent Modolo authored 5 years ago
  
  Verified
  
  99eb8705
Apr 16, 2019
- bedtools: update in2p3 config · a567c6aa
  Laurent Modolo authored 5 years ago
  
  Verified
  
  a567c6aa
- change .sif to .img for singularity img · a972f993
  Laurent Modolo authored 5 years ago
  
  Verified
  
  a972f993
Mar 22, 2019
- psmn: remove mail report from config files · 016b5b22
  Laurent Modolo authored 6 years ago
  
  Unverified
  
  016b5b22
Mar 20, 2019
- fix training_dataset pipeline · 7fa6b2d4
  Laurent Modolo authored 6 years ago
  
  Unverified
  
  7fa6b2d4
Mar 06, 2019
- bwa: fix warining in tests · d0a65940
  Laurent Modolo authored 6 years ago
  
  Unverified
  
  d0a65940
- nf_modules: update config files to match psmn lowercase module names · 80b5c871
  Laurent Modolo authored 6 years ago
  
  Unverified
  
  80b5c871
Mar 04, 2019
- rename module to lowercase · 231fd9e6
  Laurent Modolo authored 6 years ago
  
  v0.2.8 Verified
  
  231fd9e6
Mar 01, 2019
- bedtools: update singularity path · edd04712
  Laurent Modolo authored 6 years ago
  
  Verified
  
  edd04712
- BEDtools: add singularity to nf files · f1a4275c
  Laurent Modolo authored 6 years ago
  
  Verified
  
  f1a4275c
Oct 26, 2018
- nf modules config: remove cpus info · 03f44eef
  Laurent Modolo authored 6 years ago
  
  Unverified
  
  03f44eef
Oct 24, 2018
- add clusterOption for psmn to all config files · e057e9a1
  Laurent Modolo authored 6 years ago
  
  Unverified
  
  e057e9a1
Oct 23, 2018
- nf module: update executor from psmn to sge · 9fdc0424
  Laurent Modolo authored 6 years ago
  
  Unverified
  
  9fdc0424
- nf config: rename sge to psmn · fa486dc6
  Laurent Modolo authored 6 years ago
  
  Unverified
  
  fa486dc6
- BEDtools: update nf config file for PSMN · c1446208
  Laurent Modolo authored 6 years ago
  
  Unverified
  
  c1446208
Aug 22, 2018
- BEDtools: update nf structure · 2a991dc6
  Laurent Modolo authored 6 years ago
  
  Verified
  
  2a991dc6
Jun 06, 2018
- add sge config for some modules · 3454e1e8
  Laurent Modolo authored 6 years ago
  
  Verified
  
  3454e1e8
- mv test.sh file from docker_modules to nf_modules · 8aee48b9
  Laurent Modolo authored 6 years ago
  
  Verified
  
  8aee48b9