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Unverified Commit d0a65940 authored by Laurent Modolo's avatar Laurent Modolo
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bwa: fix warining in tests

parent f720ba52
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......@@ -12,7 +12,7 @@ profiles {
singularity {
singularity.enabled = true
process {
withName: trimming {
withName: fasta_from_bed {
container = "file://bin/bedtools:2.25.0.sif"
cpus = 1
}
......
......@@ -13,7 +13,7 @@
./nextflow src/nf_modules/bwa/mapping_paired.nf \
-c src/nf_modules/bwa/mapping_paired.config \
-profile docker \
--index "results/mapping/index/tiny_v2*" \
--index "results/mapping/index/tiny_v2.*" \
--fastq "data/tiny_dataset/fastq/tiny*_R{1,2}.fastq" \
-resume
......@@ -35,7 +35,7 @@ if [ -x "$(command -v singularity)" ]; then
./nextflow src/nf_modules/bwa/mapping_paired.nf \
-c src/nf_modules/bwa/mapping_paired.config \
-profile singularity \
--index "results/mapping/index/tiny_v2*" \
--index "results/mapping/index/tiny_v2.*" \
--fastq "data/tiny_dataset/fastq/tiny*_R{1,2}.fastq" \
-resume
......
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