diff --git a/src/nf_modules/bedtools/fasta_from_bed.config b/src/nf_modules/bedtools/fasta_from_bed.config index c1ac99f140dd3d71c0d592432ef1666ff52fc25b..0a70980b2a67ee36c53fb9f3d58546bc81584517 100644 --- a/src/nf_modules/bedtools/fasta_from_bed.config +++ b/src/nf_modules/bedtools/fasta_from_bed.config @@ -12,7 +12,7 @@ profiles { singularity { singularity.enabled = true process { - withName: trimming { + withName: fasta_from_bed { container = "file://bin/bedtools:2.25.0.sif" cpus = 1 } diff --git a/src/nf_modules/bwa/tests.sh b/src/nf_modules/bwa/tests.sh index 2125e6c3ca5693324483f801c7630d8df406e252..e601d200cd9b642ad7d96ff05be666938e2c6178 100755 --- a/src/nf_modules/bwa/tests.sh +++ b/src/nf_modules/bwa/tests.sh @@ -13,7 +13,7 @@ ./nextflow src/nf_modules/bwa/mapping_paired.nf \ -c src/nf_modules/bwa/mapping_paired.config \ -profile docker \ - --index "results/mapping/index/tiny_v2*" \ + --index "results/mapping/index/tiny_v2.*" \ --fastq "data/tiny_dataset/fastq/tiny*_R{1,2}.fastq" \ -resume @@ -35,7 +35,7 @@ if [ -x "$(command -v singularity)" ]; then ./nextflow src/nf_modules/bwa/mapping_paired.nf \ -c src/nf_modules/bwa/mapping_paired.config \ -profile singularity \ - --index "results/mapping/index/tiny_v2*" \ + --index "results/mapping/index/tiny_v2.*" \ --fastq "data/tiny_dataset/fastq/tiny*_R{1,2}.fastq" \ -resume