Commits · 47445222f2c22d5248714a75ec8c26318884b32f · LBMC / nextflow

Oct 05, 2021
- ucsc: remote - from bigWigToWig · 47445222
  Laurent Modolo authored 3 years ago
  
  47445222
- danpos: remove trace of DSL1 · 86073f75
  Laurent Modolo authored 3 years ago
  
  86073f75
- danpos: change publishDir capture pattern · 94bb6475
  Laurent Modolo authored 3 years ago
  
  94bb6475
- danpos: fix file_id handling · ea629173
  Laurent Modolo authored 3 years ago
  
  ea629173
- danpos: change channel cardinality · fa6ec732
  Laurent Modolo authored 3 years ago
  
  fa6ec732
- rasusa: fix file_id variable · 0ff930d9
  Laurent Modolo authored 3 years ago
  
  0ff930d9
- danpos: fix channel name · a2cdd53d
  Laurent Modolo authored 3 years ago
  
  a2cdd53d
Oct 04, 2021
- emase-zero: remove personalized gene_to_transcript file · 1fd19b76
  Laurent Modolo authored 3 years ago
  
  1fd19b76
- danpos: change bg to bw · d144d7db
  Laurent Modolo authored 3 years ago
  
  d144d7db
- danpos: simplify bg2wig import · 9d6cde36
  Laurent Modolo authored 3 years ago
  
  9d6cde36
- emase-zero: fix stderr redirection · 8c4b0d09
  Laurent Modolo authored 3 years ago
  
  8c4b0d09
Oct 01, 2021
- emase-zero: fix output redirection · d8c768ae
  Laurent Modolo authored 3 years ago
  
  d8c768ae
- emase-zero: redirect all output to report file · 0212e0cb
  Laurent Modolo authored 3 years ago
  
  0212e0cb
- emase-zero: update error handling · 3cc41591
  Laurent Modolo authored 3 years ago
  
  3cc41591
- emase-zero: fix gene_to_transcript file to add strain info to gene name · 3ed5a9ca
  Laurent Modolo authored 3 years ago
  
  3ed5a9ca
Sep 30, 2021
- emase-zero.nf: change cardinality of the inputs · 231d2aaf
  Laurent Modolo authored 3 years ago
  
  231d2aaf
Sep 29, 2021
- danpos: add bg input · 86af07f9
  Laurent Modolo authored 3 years ago
  
  86af07f9
- uscc: add bigwig_to_wig process · d1a7babc
  Laurent Modolo authored 3 years ago
  
  d1a7babc
- nf_modules: add danpos · ffc9eb1e
  Laurent Modolo authored 3 years ago
  
  ffc9eb1e
- emase: add diploid_genome process · 4c5e844d
  Laurent Modolo authored 3 years ago
  
  4c5e844d
- rasusa: add default to no subsampling · 55235371
  Laurent Modolo authored 3 years ago
  
  55235371
- Docker: add rasusa img compatible with nf · 90eaa269
  Laurent Modolo authored 3 years ago
  
  90eaa269
- rasusa: fix multiple bug · d7fb6ef9
  Laurent Modolo authored 3 years ago
  
  d7fb6ef9
- nf_modules: add rasusa · 7d386a5e
  Laurent Modolo authored 3 years ago
  
  7d386a5e
- src/nextflow.config: add podman profile · 92896b97
  Laurent Modolo authored 3 years ago
  
  92896b97
Sep 24, 2021
- Docker emase: add ps · bbcd680f
  Laurent Modolo authored 3 years ago
  
  bbcd680f
- emase: fix output variable · 72fb6204
  Laurent Modolo authored 3 years ago
  
  72fb6204
- emase: update input format · bbb9ee8d
  Laurent Modolo authored 3 years ago
  
  bbb9ee8d
- emase: add diploid_genome process · 0d79273c
  Laurent Modolo authored 3 years ago
  
  0d79273c
Sep 23, 2021
- CONTRIBUTING.md: fix bug in file_prefix definition · 1db31f43
  Laurent Modolo authored 3 years ago
  
  1db31f43
- doc/building_your_pipeline.md: update psmn frontal · 11121155
  Laurent Modolo authored 3 years ago
  
  11121155
- doc/building_your_pipeline.md: fix typo · 4c4f9b42
  Laurent Modolo authored 3 years ago
  
  4c4f9b42
- fix README url · 67b9e31d
  Laurent Modolo authored 3 years ago
  
  67b9e31d
- emase: working Dockerfile for emase to install it from conda · aaa243c8
  Laurent Modolo authored 3 years ago
  
  aaa243c8
Sep 21, 2021
- danpos3: add non working Dockerfile · bde11db3
  Laurent Modolo authored 3 years ago
  
  bde11db3
- emase: update Dockerfile but still not working · 0df86371
  Laurent Modolo authored 3 years ago
  
  0df86371
Sep 01, 2021
- bowtie2: simplify index name · 55144a92
  Laurent Modolo authored 3 years ago
  
  55144a92
Aug 24, 2021
- emase-zero.nf: fix typo :53 and :55 · 9bc7e4c1
  Laurent Modolo authored 3 years ago
  
  9bc7e4c1
Aug 23, 2021
- emase-zero: replace file_prefix by file_id · a8c8f525
  Laurent Modolo authored 3 years ago
  
  a8c8f525
Aug 20, 2021
- emase-zero.nf: fix output path · 761843cc
  Laurent Modolo authored 3 years ago
  
  761843cc