rasusa: fix multiple bug

src/nf_modules/rasusa/main.nf

 version = "0.6.0"
-container_url = "quay.io/mbhall88/rasusa:${version}"
+container_url = "lbmc/rasusa:${version}"
 
 include { index_fasta } from "./../samtools/main.nf"
 
@@ -26,7 +26,7 @@ process sub_sample_fastq {
   label "small_mem_multi_cpus"
   tag "$file_id"
   if (params.index_fasta_out != "") {
-    publishDir "results/${params.sample_fastq}", mode: 'copy'
+    publishDir "results/${params.sample_fastq_out}", mode: 'copy'
   }
 
   input:
@@ -66,7 +66,7 @@ rasusa \
   else
 """
 rasusa \
-  -i ${fastq} ${fastq} \
+  -i ${fastq} \
   -g ${idx} \
   ${sample_option} \
   -o sub_${fastq.simpleName}.fastq.gz

src/nf_modules/rasusa/test.nf

@@ -5,13 +5,13 @@ nextflow.enable.dsl=2
 ./nextflow src/nf_modules/rasusa/test.nf -c src/nextflow.config -profile docker --fasta "data/tiny_dataset/fasta/tiny_v2.fasta" --fastq "data/tiny_dataset/fastq/tiny_R1.fastq" --size "1Mb"
 */
 
-include { sample_fastq } from "./main.nf" addParams(sample_fastq_coverage: params.coverage, sample_fastq_size: "")
-
 params.fastq = "data/fastq/*R{1,2}*"
 params.fasta = "data/fasta/*.fasta"
 params.coverage = "2.0"
 params.size = ""
 
+include { sample_fastq } from "./main.nf" addParams(sample_fastq_coverage: params.coverage, sample_fastq_size: params.size, sample_fastq_out: "sample/")
+
 channel
   .fromFilePairs( params.fastq, size: -1)
   .set { fastq_files }