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Verified Commit 0212e0cb authored by Laurent Modolo's avatar Laurent Modolo
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emase-zero: redirect all output to report file

parent 3cc41591
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......@@ -48,10 +48,11 @@ grep ">" ${fasta} | sed 's/>//' > tr_list.txt
grep -Fw -f tr_list.txt ${gene_to_transcript} | \
sed -E 's/(.+gn[0-9]+)(.+)(_.+)/\\1\\3\\2\\3/g' > \
gene_to_transcript.txt
emase-zero ${params.count} \
-o ${bin.simpleName}.quantified \
-l ${transcript_length} \
-g gene_to_transcript.txt \
${bin} 2> ${file_id}_emase-zero_report.txt
${bin} 2&1> ${file_id}_emase-zero_report.txt
"""
}
\ No newline at end of file
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