diff --git a/src/nf_modules/emase-zero/main.nf b/src/nf_modules/emase-zero/main.nf index 179078b1ee10bb5478be9af5c3fcd9b9e4926fd4..02b64fe4a92727a11990f88dcd619b31bfb8fa95 100644 --- a/src/nf_modules/emase-zero/main.nf +++ b/src/nf_modules/emase-zero/main.nf @@ -48,10 +48,11 @@ grep ">" ${fasta} | sed 's/>//' > tr_list.txt grep -Fw -f tr_list.txt ${gene_to_transcript} | \ sed -E 's/(.+gn[0-9]+)(.+)(_.+)/\\1\\3\\2\\3/g' > \ gene_to_transcript.txt + emase-zero ${params.count} \ -o ${bin.simpleName}.quantified \ -l ${transcript_length} \ -g gene_to_transcript.txt \ - ${bin} 2> ${file_id}_emase-zero_report.txt + ${bin} 2&1> ${file_id}_emase-zero_report.txt """ } \ No newline at end of file