Commits · 231d2aaff7cad60978a6edee7cfebd3dbc5acd66 · LBMC / nextflow

Jun 04, 2021
- cleanup DSL1 test.sh · 2150d981
  Laurent Modolo authored 3 years ago
  
  2150d981
- switcth to nextflow DSL2 · cc2d49f6
  Laurent Modolo authored 3 years ago
  
  cc2d49f6
Jun 02, 2021
- fix emit: for named workflow · 92e0e00a
  Laurent Modolo authored 3 years ago
  
  92e0e00a
- bwa: add mapping workflow · 6f67c65c
  Laurent Modolo authored 3 years ago
  
  6f67c65c
May 03, 2021
- bwa: fix index names in mapping · 86b3d5ab
  Laurent Modolo authored 3 years ago
  
  86b3d5ab
Apr 29, 2021
- bwa: update index name · 7b94a507
  Laurent Modolo authored 4 years ago
  
  7b94a507
- bwa: fix index variable · 3cfd27b2
  Laurent Modolo authored 4 years ago
  
  3cfd27b2
Apr 16, 2021
- nf_modules: fix paired-single end handling · 481dc0d4
  Laurent Modolo authored 4 years ago
  
  481dc0d4
Apr 15, 2021
- bwa: fix variable name :46 · bca33ec1
  Laurent Modolo authored 4 years ago
  
  bca33ec1
- bwa: add missing { :52 · 41ae8c2e
  Laurent Modolo authored 4 years ago
  
  41ae8c2e
- bwa: test if file_id is Map · c6be6b39
  Laurent Modolo authored 4 years ago
  
  c6be6b39
- bwa: new change and library def · 34b4db9d
  Laurent Modolo authored 4 years ago
  
  34b4db9d
- bwa: fix missing } :52 · fe818588
  Laurent Modolo authored 4 years ago
  
  fe818588
- bwa: handle dict as file_id for mapping_fastq · 1de16f9a
  Laurent Modolo authored 4 years ago
  
  1de16f9a
- bwa: change index and fastq order for mapping · e3de37bc
  Laurent Modolo authored 4 years ago
  
  e3de37bc
- bwa: fix library variable definition · e13bd1eb
  Laurent Modolo authored 4 years ago
  
  e13bd1eb
- bwa: fix typo in index_fasta · edd36c5b
  Laurent Modolo authored 4 years ago
  
  edd36c5b
Apr 14, 2021
- bwa: update to match CONTRIBUTING.md · c6dce992
  Laurent Modolo authored 4 years ago
  
  c6dce992
Apr 08, 2021
- bwa: add params.bwa · ece57ce1
  Laurent Modolo authored 4 years ago
  
  ece57ce1
Mar 12, 2021
- bwa: add single_end mapping · d0b4f082
  Laurent Modolo authored 4 years ago
  
  d0b4f082
- bwa: fix file_id definition · 71eb3162
  Laurent Modolo authored 4 years ago
  
  71eb3162
- bwa: fix bug :46 · 801d4f6a
  Laurent Modolo authored 4 years ago
  
  801d4f6a
- bwa: fix previous commit · e801efee
  Laurent Modolo authored 4 years ago
  
  e801efee
- bwa: conditional definition of the library tag · 70a181f4
  Laurent Modolo authored 4 years ago
  
  70a181f4
- bwa: fix bam tag format · 0db3382c
  Laurent Modolo authored 4 years ago
  
  0db3382c
Feb 25, 2021
- bwa: add quote surrounding -R option · 97953ba2
  Laurent Modolo authored 4 years ago
  
  97953ba2
- bwa: fix bwa_mem_R call · ade97af3
  Laurent Modolo authored 4 years ago
  
  ade97af3
- bwa: add params.bwa_mem_R variable · 449693e2
  Laurent Modolo authored 4 years ago
  
  449693e2
Feb 22, 2021
- bwa: fix report name · b725862d
  Laurent Modolo authored 4 years ago
  
  b725862d
Feb 20, 2021
- bwa: fix typo :42 · e7bfb733
  Laurent Modolo authored 4 years ago
  
  e7bfb733
- bwa: fix typo :42 · c99e5a39
  Laurent Modolo authored 4 years ago
  
  c99e5a39
- bwa: replace sambamba by sambools · 0e7adae3
  Laurent Modolo authored 4 years ago
  
  0e7adae3
Feb 18, 2021
- bwa: fix typo :42 · b0cf08d6
  Laurent Modolo authored 4 years ago
  
  b0cf08d6
Feb 15, 2021
- fix bwa indexing · 21f39466
  Laurent Modolo authored 4 years ago
  
  21f39466
- update picard samtools and bwa for DSL2 · 7a17de40
  Laurent Modolo authored 4 years ago
  
  7a17de40
Apr 27, 2020
- remove copying for psmn config · 87c79ae2
  Laurent Modolo authored 5 years ago
  
  87c79ae2
Apr 20, 2020
- nf_modules: disable scratch for psmn · 8d47aa31
  Laurent Modolo authored 5 years ago
  
  8d47aa31
- nf_modules: switch psmn to singularity · 670315f5
  Laurent Modolo authored 5 years ago
  
  670315f5
Apr 17, 2020
- update psmn config to new queues · c116038b
  Laurent Modolo authored 5 years ago
  
  c116038b
Nov 28, 2019
- *.config: fix singularity cacheDir path for in2p3 · 30b52060
  Laurent Modolo authored 5 years ago
  
  30b52060