Commits · 231d2aaff7cad60978a6edee7cfebd3dbc5acd66 · LBMC / nextflow

Sep 30, 2021
- emase-zero.nf: change cardinality of the inputs · 231d2aaf
  Laurent Modolo authored 3 years ago
  
  231d2aaf
Sep 29, 2021
- danpos: add bg input · 86af07f9
  Laurent Modolo authored 3 years ago
  
  86af07f9
- uscc: add bigwig_to_wig process · d1a7babc
  Laurent Modolo authored 3 years ago
  
  d1a7babc
- nf_modules: add danpos · ffc9eb1e
  Laurent Modolo authored 3 years ago
  
  ffc9eb1e
- emase: add diploid_genome process · 4c5e844d
  Laurent Modolo authored 3 years ago
  
  4c5e844d
- rasusa: add default to no subsampling · 55235371
  Laurent Modolo authored 3 years ago
  
  55235371
- Docker: add rasusa img compatible with nf · 90eaa269
  Laurent Modolo authored 3 years ago
  
  90eaa269
- rasusa: fix multiple bug · d7fb6ef9
  Laurent Modolo authored 3 years ago
  
  d7fb6ef9
- nf_modules: add rasusa · 7d386a5e
  Laurent Modolo authored 3 years ago
  
  7d386a5e
- src/nextflow.config: add podman profile · 92896b97
  Laurent Modolo authored 3 years ago
  
  92896b97
Sep 24, 2021
- Docker emase: add ps · bbcd680f
  Laurent Modolo authored 3 years ago
  
  bbcd680f
- emase: fix output variable · 72fb6204
  Laurent Modolo authored 3 years ago
  
  72fb6204
- emase: update input format · bbb9ee8d
  Laurent Modolo authored 3 years ago
  
  bbb9ee8d
- emase: add diploid_genome process · 0d79273c
  Laurent Modolo authored 3 years ago
  
  0d79273c
Sep 23, 2021
- CONTRIBUTING.md: fix bug in file_prefix definition · 1db31f43
  Laurent Modolo authored 3 years ago
  
  1db31f43
- doc/building_your_pipeline.md: update psmn frontal · 11121155
  Laurent Modolo authored 3 years ago
  
  11121155
- doc/building_your_pipeline.md: fix typo · 4c4f9b42
  Laurent Modolo authored 3 years ago
  
  4c4f9b42
- fix README url · 67b9e31d
  Laurent Modolo authored 3 years ago
  
  67b9e31d
- emase: working Dockerfile for emase to install it from conda · aaa243c8
  Laurent Modolo authored 3 years ago
  
  aaa243c8
Sep 21, 2021
- danpos3: add non working Dockerfile · bde11db3
  Laurent Modolo authored 3 years ago
  
  bde11db3
- emase: update Dockerfile but still not working · 0df86371
  Laurent Modolo authored 3 years ago
  
  0df86371
Sep 01, 2021
- bowtie2: simplify index name · 55144a92
  Laurent Modolo authored 3 years ago
  
  55144a92
Aug 24, 2021
- emase-zero.nf: fix typo :53 and :55 · 9bc7e4c1
  Laurent Modolo authored 3 years ago
  
  9bc7e4c1
Aug 23, 2021
- emase-zero: replace file_prefix by file_id · a8c8f525
  Laurent Modolo authored 3 years ago
  
  a8c8f525
Aug 20, 2021
- emase-zero.nf: fix output path · 761843cc
  Laurent Modolo authored 3 years ago
  
  761843cc
- emase-zero: redirect stdrr to report file · 76661338
  Laurent Modolo authored 3 years ago
  
  76661338
- emase-zero.nf: fix typo :47 · bfa37a10
  Laurent Modolo authored 3 years ago
  
  bfa37a10
Aug 19, 2021
- emase-zero: filter g2tr list from sequence name in the fasta · 531b30b6
  Laurent Modolo authored 3 years ago
  
  531b30b6
- emase-zero: fix typo :21 · fdacd794
  Laurent Modolo authored 3 years ago
  
  fdacd794
- emase-zero: use g2tr instean of tr2g · 950ec4b3
  Laurent Modolo authored 3 years ago
  
  950ec4b3
- kb: add g2t process · 734051f9
  Laurent Modolo authored 3 years ago
  
  734051f9
Aug 18, 2021
- emase-zero: change ${bin} argument · 451b7da0
  Laurent Modolo authored 3 years ago
  
  451b7da0
Aug 17, 2021
- gatk4: add samtools bam index · 607bf264
  Laurent Modolo authored 3 years ago
  
  607bf264
- alntools: fix tsv output :20 · 7eeb7d90
  Laurent Modolo authored 3 years ago
  
  7eeb7d90
Aug 16, 2021
- Merge branch 'crey02-master-patch-25149' into 'master' · 9489f360
  Laurent Modolo authored 3 years ago
  
  Crey02 master patch 25149 See merge request !24
  9489f360
Jul 23, 2021
- alntools: redirect stderr to report file · 8be11d56
  Laurent Modolo authored 3 years ago
  
  8be11d56
Jul 22, 2021
- kb: t2g tools work and gz and plain file · 7a115a1a
  Laurent Modolo authored 3 years ago
  
  7a115a1a
Jul 21, 2021
- macs2: set default qvalue to 0.99 · 6ddf33f5
  Laurent Modolo authored 3 years ago
  
  6ddf33f5
- kb: create a correction step for the t2g.txt messed with by kb · 5dc7c7f8
  Laurent Modolo authored 3 years ago
  
  5dc7c7f8
- kb: add clean t2g script in count processes · c3a4c54e
  Laurent Modolo authored 3 years ago
  
  c3a4c54e