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Verified Commit e13bd1eb authored by Laurent Modolo's avatar Laurent Modolo
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bwa: fix library variable definition

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src/nf_modules/bwa/main.nf
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...@@ -52,10 +52,11 @@ process mapping_fastq { ...@@ -52,10 +52,11 @@ process mapping_fastq {
library = file_id.library library = file_id.library
file_prefix = file_id.id file_prefix = file_id.id
} else { } else {
library = file_id library = file_id[0]
file_prefix = file_id file_prefix = file_id[0]
} }
} else { } else {
library = file_id
file_prefix = file_id file_prefix = file_id
} }
bwa_mem_R = "@RG\\tID:${library}\\tSM:${library}\\tLB:lib_${library}\\tPL:illumina" bwa_mem_R = "@RG\\tID:${library}\\tSM:${library}\\tLB:lib_${library}\\tPL:illumina"
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