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Verified Commit b0cf08d6 authored by Laurent Modolo's avatar Laurent Modolo
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bwa: fix typo :42

parent b5a93ee3
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......@@ -39,7 +39,7 @@ process mapping_fastq {
bwa mem -t ${task.cpus} \
${index_id} ${reads[0]} ${reads[1]} 2> \
${file_id}_bwa_report.txt | \
sambamba view -S -t ${task/cpus} -f bam - > ${file_id}.bam
sambamba view -S -t ${task.cpus} -f bam - > ${file_id}.bam
"""
}
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