diff --git a/src/nf_modules/bwa/main.nf b/src/nf_modules/bwa/main.nf index 998643b5b18ee85f0c66ac354e5f2e0a8c1ada38..38b925128bac786698dd3f8590a3cc50ef996dcd 100644 --- a/src/nf_modules/bwa/main.nf +++ b/src/nf_modules/bwa/main.nf @@ -39,7 +39,7 @@ process mapping_fastq { bwa mem -t ${task.cpus} \ ${index_id} ${reads[0]} ${reads[1]} 2> \ ${file_id}_bwa_report.txt | \ - sambamba view -S -t ${task/cpus} -f bam - > ${file_id}.bam + sambamba view -S -t ${task.cpus} -f bam - > ${file_id}.bam """ }