From b0cf08d6392952b2208d81668cfd7c6cef411c67 Mon Sep 17 00:00:00 2001 From: Laurent Modolo <laurent.modolo@ens-lyon.fr> Date: Thu, 18 Feb 2021 17:32:33 +0100 Subject: [PATCH] bwa: fix typo :42 --- src/nf_modules/bwa/main.nf | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/nf_modules/bwa/main.nf b/src/nf_modules/bwa/main.nf index 998643b5..38b92512 100644 --- a/src/nf_modules/bwa/main.nf +++ b/src/nf_modules/bwa/main.nf @@ -39,7 +39,7 @@ process mapping_fastq { bwa mem -t ${task.cpus} \ ${index_id} ${reads[0]} ${reads[1]} 2> \ ${file_id}_bwa_report.txt | \ - sambamba view -S -t ${task/cpus} -f bam - > ${file_id}.bam + sambamba view -S -t ${task.cpus} -f bam - > ${file_id}.bam """ } -- GitLab