From b0cf08d6392952b2208d81668cfd7c6cef411c67 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Thu, 18 Feb 2021 17:32:33 +0100
Subject: [PATCH] bwa: fix typo :42

---
 src/nf_modules/bwa/main.nf | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/src/nf_modules/bwa/main.nf b/src/nf_modules/bwa/main.nf
index 998643b5..38b92512 100644
--- a/src/nf_modules/bwa/main.nf
+++ b/src/nf_modules/bwa/main.nf
@@ -39,7 +39,7 @@ process mapping_fastq {
 bwa mem -t ${task.cpus} \
 ${index_id} ${reads[0]} ${reads[1]} 2> \
   ${file_id}_bwa_report.txt | \
-  sambamba view -S -t ${task/cpus} -f bam - > ${file_id}.bam
+  sambamba view -S -t ${task.cpus} -f bam - > ${file_id}.bam
 """
 }
 
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