Commits · 46b3c445de2339aa1125f25655b73bb0215caa42 · LBMC / Hub / hic

Jun 05, 2023
- subworkflows/local/hicstuff_sub.nf: remove some unused import and rename the SAMTOOLS_SORT process · 46b3c445
  nfontrod authored 1 year ago
  
  46b3c445
- subworkflows/local/hicstuff_sub.nf: update · ad343845
  nfontrod authored 1 year ago
  
  ad343845
- subworkflows/local/hicstuff_sub.nf: update · 40694c85
  nfontrod authored 1 year ago
  
  40694c85
- modules/nf-core/custom/filterbam/main.nf: add new module · b150868b
  nfontrod authored 1 year ago
  
  b150868b
Jun 02, 2023
- TO FIX markduplicates picard · b607dc0e
  Mia Croiset authored 1 year ago
  
  b607dc0e
Jun 01, 2023
- suppr view · 59bd5bf1
  Mia Croiset authored 1 year ago
  
  59bd5bf1
- correct path samtools sort · 9107a54e
  Mia Croiset authored 1 year ago
  
  9107a54e
- correct path of markduplicates · 09e19d2d
  Mia Croiset authored 1 year ago
  
  09e19d2d
- TO FIX markduplicates pcr filter option · f8fcb912
  Mia Croiset authored 1 year ago
  
  f8fcb912
May 12, 2023
- hicstuff pcr filter module · 364489ed
  Mia Croiset authored 1 year ago
  
  364489ed
May 11, 2023
- hicstuff distance law option · fae56c14
  Mia Croiset authored 1 year ago
  
  fae56c14
May 10, 2023
- hicstuff fragment & filter plot option correction · c3fd3dfa
  Mia Croiset authored 1 year ago
  
  c3fd3dfa
May 04, 2023
- hicstuff filter events module · a757671e
  Mia Croiset authored 1 year ago
  
  a757671e
May 03, 2023
- Different matrix building · c4a7c592
  Mia Croiset authored 1 year ago
  
  c4a7c592
Mar 08, 2023
- CORRECTION hicstuff_sub · a340eef4
  Mia Croiset authored 2 years ago
  
  a340eef4
Mar 03, 2023
- create build_matrix_cool module + finish args def · e2884900
  Mia Croiset authored 2 years ago
  
  e2884900
- ARGS hicstuff bam2pairs · b3ded1fb
  Mia Croiset authored 2 years ago
  
  b3ded1fb
- ARGS hicstuff align_bowtie2 & fragment_enzyme · 53877492
  Mia Croiset authored 2 years ago
  
  53877492
Mar 01, 2023
- CORRECTION build_matrix output name · 88bb01fc
  Mia Croiset authored 2 years ago
  
  88bb01fc
Feb 27, 2023
- CORRECTION module bam2pairs input bam · dcd2e93f
  Mia Croiset authored 2 years ago
  
  dcd2e93f
Feb 16, 2023
- TEST module build_matrix · f54462d4
  Mia Croiset authored 2 years ago
  
  f54462d4
Feb 15, 2023
- TEST module bam2pairs · 9f6f0ce6
  Mia Croiset authored 2 years ago
  
  9f6f0ce6
Feb 10, 2023
- TEST fragment enzyme modules · f1fe040e
  Mia Croiset authored 2 years ago
  
  f1fe040e
Feb 03, 2023
- TEST correction alignement meta chunck · 4aa3ea2e
  Mia Croiset authored 2 years ago
  
  4aa3ea2e
Jan 30, 2023
- TEST alignement bowtie2 · bc0cf956
  Mia Croiset authored 2 years ago
  
  bc0cf956
Jan 06, 2023
- Update hic.nf · 9b7e1961
  Nicolas Servant authored 2 years ago
  
  inline channel build as suggested by @maxulysse
  9b7e1961
- Update workflows/hic.nf · 262c90a4
  Nicolas Servant authored 2 years ago
  
  Co-authored-by: Maxime U. Garcia <max.u.garcia@gmail.com>
  262c90a4
- Update zenodo links · 86999cd9
  Nicolas Servant authored 2 years ago
  
  Co-authored-by: Maxime U. Garcia <max.u.garcia@gmail.com>
  86999cd9
Jan 04, 2023
- Merge pull request #143 from nservant/dev · f593a1b5
  Nicolas Servant authored 2 years ago
  
  update docs
  f593a1b5
- [LINT] fix linting issues · a8e07443
  nservant authored 2 years ago
  
  a8e07443
- [LINT] fix linting issues · 2a24e909
  nservant authored 2 years ago
  
  2a24e909
- [MODIF] update docs · 273cba0e
  nservant authored 2 years ago
  
  273cba0e
- [MODIF] update docs · f1633719
  nservant authored 2 years ago
  
  f1633719
- [MODIF] update docs · 5a17d819
  nservant authored 2 years ago
  
  5a17d819
- Merge pull request #142 from nservant/dev · 7234efaf
  Nicolas Servant authored 2 years ago
  
  new DSL2 version
  7234efaf
- [LINT] Run black · 6fbdb2eb
  Edmund Miller authored 2 years ago
  
  6fbdb2eb
- [LINT] fix linting issues · 89bce41e
  nservant authored 2 years ago
  
  89bce41e
- Add comments in bowtie call · f5686750
  nservant authored 2 years ago
  
  f5686750
- Update subworkflows/local/hicpro.nf · 170a492b
  Nicolas Servant authored 2 years ago
  
  Co-authored-by: Maxime U. Garcia <maxime.garcia@seqera.io>
  170a492b
- Update modules/local/hicpro/run_ice.nf · 4941e174
  Nicolas Servant authored 2 years ago
  
  Co-authored-by: Maxime U. Garcia <maxime.garcia@seqera.io>
  4941e174