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Verified Commit a340eef4 authored by Mia Croiset's avatar Mia Croiset
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CORRECTION hicstuff_sub

parent e2884900
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......@@ -3,6 +3,7 @@ include { BOWTIE2_ALIGNMENT } from '../../modules/local/hicstuff/align_bowtie2'
include { FRAGMENT_ENZYME } from '../../modules/local/hicstuff/fragment_enzyme'
include { BAM2PAIRS } from '../../modules/local/hicstuff/bam2pairs'
include { BUILD_MATRIX } from '../../modules/local/hicstuff/build_matrix'
include { BUILD_MATRIX_COOL } from '../../modules/local/hicstuff/build_matrix_cool'
// Paired-end to Single-end
def pairToSingle(row, mates) {
......@@ -65,4 +66,9 @@ workflow HICSTUFF_SUB {
BAM2PAIRS.out.idx_pairs,
FRAGMENT_ENZYME.out.fragments_list
)
BUILD_MATRIX_COOL(
BAM2PAIRS.out.idx_pairs,
FRAGMENT_ENZYME.out.fragments_list
)
}
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