From a340eef4741f103c91db559e0203c3eeefd3dfb1 Mon Sep 17 00:00:00 2001
From: Mia Croiset <mia.croiset@ens-lyon.fr>
Date: Wed, 8 Mar 2023 13:48:34 +0100
Subject: [PATCH] CORRECTION hicstuff_sub
---
subworkflows/local/hicstuff_sub.nf | 6 ++++++
1 file changed, 6 insertions(+)
diff --git a/subworkflows/local/hicstuff_sub.nf b/subworkflows/local/hicstuff_sub.nf
index 09cd683..60f1f79 100644
--- a/subworkflows/local/hicstuff_sub.nf
+++ b/subworkflows/local/hicstuff_sub.nf
@@ -3,6 +3,7 @@ include { BOWTIE2_ALIGNMENT } from '../../modules/local/hicstuff/align_bowtie2'
include { FRAGMENT_ENZYME } from '../../modules/local/hicstuff/fragment_enzyme'
include { BAM2PAIRS } from '../../modules/local/hicstuff/bam2pairs'
include { BUILD_MATRIX } from '../../modules/local/hicstuff/build_matrix'
+include { BUILD_MATRIX_COOL } from '../../modules/local/hicstuff/build_matrix_cool'
// Paired-end to Single-end
def pairToSingle(row, mates) {
@@ -65,4 +66,9 @@ workflow HICSTUFF_SUB {
BAM2PAIRS.out.idx_pairs,
FRAGMENT_ENZYME.out.fragments_list
)
+
+ BUILD_MATRIX_COOL(
+ BAM2PAIRS.out.idx_pairs,
+ FRAGMENT_ENZYME.out.fragments_list
+ )
}
--
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