Commits · 2894bcf47d4c29ddba687730eb8115f212af1c9f · LBMC / Hub / hic

Feb 26, 2024
- delete hicstuff_min_mapq and use min_qual instead · 2894bcf4
  Mia Croiset authored 1 year ago
  
  2894bcf4
Feb 22, 2024
- remove duplicated arguments between the two workflows · 966011bb
  Mia Croiset authored 1 year ago
  
  966011bb
- delete build_matrix_cool_alt which is useless now · 104f1db4
  Mia Croiset authored 1 year ago
  
  104f1db4
Feb 06, 2024
- add iterative and cutsite options to docs · e55ab8a3
  Mia Croiset authored 1 year ago
  
  e55ab8a3
Jan 30, 2024
- add iterative mode for alignment · 47784de8
  Mia Croiset authored 1 year ago
  
  47784de8
Dec 18, 2023
- add cutsite option · 42307c8b
  Mia Croiset authored 1 year ago
  
  42307c8b
Dec 04, 2023
- add enabled option to avoid keeping heavy files · 0e5aaa24
  Mia Croiset authored 1 year ago
  
  0e5aaa24
Jun 29, 2023
- try picard hicpro + delete temp bam sorted files · 9912cc94
  Mia Croiset authored 1 year ago
  
  9912cc94
Jun 23, 2023
- TOFIX filter picard for hicpro correction · 88d6463e
  Mia Croiset authored 1 year ago
  
  88d6463e
Jun 14, 2023
- update configs with hicstuff parameters · b6a84d53
  Mia Croiset authored 1 year ago
  
  b6a84d53
Jun 12, 2023
- filter pcr dup for hicpro · 044cb4d3
  Mia Croiset authored 1 year ago
  
  044cb4d3
May 03, 2023
- Different matrix building · c4a7c592
  Mia Croiset authored 1 year ago
  
  c4a7c592
Jan 04, 2023
- [LINT] fix linting issues · 89bce41e
  nservant authored 2 years ago
  
  89bce41e
Dec 19, 2022
- [MODIF] test --skip_compartment option #125 · 8ac65cc3
  nservant authored 2 years ago
  
  8ac65cc3
- [MODIF] update local modules · 4b0a2fe3
  nservant authored 2 years ago
  
  4b0a2fe3
- [TEST] update local modules · 05e7f6a2
  nservant authored 2 years ago
  
  05e7f6a2
- [MODULE] update cooltools · a2843225
  nservant authored 2 years ago
  
  a2843225
Jul 18, 2022
- [MODIF] test on real dataset · f3ba46f4
  nservant authored 2 years ago
  
  f3ba46f4
May 07, 2022
- [LINT] move to 4 spaces · 7ff1d2c3
  nservant authored 2 years ago
  
  7ff1d2c3
- [LINT] move to 4 spaces · 6d637055
  nservant authored 2 years ago
  
  6d637055
May 06, 2022
- [LINT] move to 4 spaces · 391e32f0
  nservant authored 2 years ago
  
  391e32f0
- [LINT] move to 4 spaces · 719e8633
  nservant authored 2 years ago
  
  719e8633
- [MODIF] update merge valid pairs · 3a6b46e4
  nservant authored 2 years ago
  
  3a6b46e4
May 05, 2022
- [LINT] fix · 058a9ad5
  nservant authored 2 years ago
  
  058a9ad5
Mar 19, 2022
- [MODIF] split_fastq · 60f80c27
  nservant authored 3 years ago
  
  60f80c27
Mar 15, 2022
- Template update for nf-core/tools version 2.3 · 18f4c9c4
  nf-core-bot authored 3 years ago
  
  18f4c9c4
Feb 28, 2022
- [MODIF] update cooltools · f17ea6ff
  nservant authored 3 years ago
  
  f17ea6ff
Feb 24, 2022
- [DSL2] add merge_stats · dda1608f
  nservant authored 3 years ago
  
  dda1608f
Feb 23, 2022
- [MODIF] add cooler subworkflow · 33572cf5
  nservant authored 3 years ago
  
  33572cf5
Feb 21, 2022
- [MODIF] HICPRO workflow is running · 48c932dd
  nservant authored 3 years ago
  
  48c932dd
Feb 13, 2022
- [MODIF] init DSL2 · c386dd18
  nservant authored 3 years ago
  
  c386dd18
Dec 14, 2021
- Template update for nf-core/tools version 2.2 · d7a1e348
  nf-core-bot authored 3 years ago
  
  d7a1e348
Oct 21, 2021
- First version DSL2 from nf-core · 1999c0d6
  plarosa authored 3 years ago
  
  1999c0d6
Jul 13, 2021
- Template update for nf-core/tools version 2.0 · 7395bacc
  kevinmenden authored 3 years ago
  
  7395bacc