conf/igenomes.config

conf/modules.config

conf/test.config

lib/WorkflowHic.groovy

main.nf

modules.json

modules/local/bowtie2_merge_mapping_steps.nf

modules/local/build_contact_maps.nf

modules/local/combine_mates.nf

modules/local/converts_to_pairs.nf

modules/local/getRestictionFragments.nf

modules/local/get_chromsize.nf

modules/local/get_restriction_fragments.nf

modules/local/get_valid_interaction.nf

modules/local/hicpro/bowtie2_merge.nf

modules/local/hicpro/build_contact_maps.nf

modules/local/hicpro/combine_mates.nf

modules/local/hicpro/combine_mates.nf~

modules/local/hicpro/get_valid_interaction.nf

modules/local/hicpro/get_valid_interaction_dnase.nf